View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_23 (Length: 389)
Name: NF19084_low_23
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 13628628 - 13628270
Alignment:
| Q |
11 |
cacagatagcgatatacgatgcttcaaacatggaattgattcgccaggtaagcagatcgtttcttcatgtattgtttaagaagnnnnnnnnnncaattat |
110 |
Q |
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| T |
13628628 |
cacagatagcgatatacgatgcttcaaacatggaattgattcgctgggtaagcagatcgtttcttcatgtattttttaagaagaaaaaaaa--caattat |
13628531 |
T |
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| Q |
111 |
cgaattttcagaaaatgcttgttttagaaattcaatatcaaattattattttttccaattatatacccttatataaaatatatcatgaaaacatgtaatg |
210 |
Q |
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| T |
13628530 |
cgaattttcagaaaatgcttgttttagaaattcaatatcaaattattattttttccaattatatacccttatataaaatatatcatgaaaacatgtaatg |
13628431 |
T |
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| Q |
211 |
caagtaaggatatgaaacttagggagtacatatttatctgtatggaagattttttaaatgcagctatactttgtattacttatgactgaattagtgacat |
310 |
Q |
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| T |
13628430 |
caagtaaggatatgaaacttagggagtacatatttatttgtatgcaagattttttaaatgcagctatattttgtattacttatgactgaattaatgacat |
13628331 |
T |
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| Q |
311 |
attttttgtttgtatatgtaatagtggctgccacaaggaggattgtctggtgccatatcct |
371 |
Q |
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| T |
13628330 |
attttttgtttgtatatgtaatagtggctgccacaaggaggattgtctggtgccatatcct |
13628270 |
T |
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