View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_low_26 (Length: 350)
Name: NF19084_low_26
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 52822841 - 52823140
Alignment:
| Q |
20 |
catcatttattttatttattccactcccaggaaatacgtataatagcctatagccctatacagga--aggaagtgtacaagttcatttccactttagttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52822841 |
catcatttattttatttattccactcccaggaaatacgtataatagcctata--------caggagaaggaagtgtacaagttcatttccactttagttc |
52822932 |
T |
|
| Q |
118 |
-acctgctattactttcactttttctttctgaattttcttagccatgtgatttctcaatagtgatattaacacgtgattgttgtcaacacatgcatgaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52822933 |
cacctgctattactttcactttttctttttgaattttcttagccatgtgatttctcaataatgatattaacacgtgattgttgtcaacacatgcatgaat |
52823032 |
T |
|
| Q |
217 |
tccaagtgcaccttgcaactttaaagggagaaaaagcaggacaaaattattcttaatcaaattttgtgaatgaaataataattattgttttcttcggcat |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52823033 |
tccaagtgcaccttgcaact----------aaaaagcaggacaaaattattcttaatcaaattttgtgaatgaaataataattattgttttcttcggcat |
52823122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 30255849 - 30255810
Alignment:
| Q |
283 |
tgaatgaaataataattattgttttcttcggcattcaact |
322 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
30255849 |
tgaacgaaataataattattgttttcttcggcattgaact |
30255810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University