View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_27 (Length: 344)
Name: NF19084_low_27
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 28675046 - 28675147
Alignment:
| Q |
76 |
ccatgtaaagaagaaggtatctgcaaaaacctttggatcaagattttcctgctcgttcagatttgcatcttgttagcactagaggaaatgctatagattc |
175 |
Q |
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| T |
28675046 |
ccatgtaaagaagaaggtatctgcaaaaacctttggatcaagattttcttgctcgttcagatttgcatcttgttagcactagaggaaatgctatagattc |
28675145 |
T |
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| Q |
176 |
tc |
177 |
Q |
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|| |
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| T |
28675146 |
tc |
28675147 |
T |
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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 28675212 - 28675299
Alignment:
| Q |
242 |
cgctgaatcttcaggttctttgaaaaatctcaactttgaaactgaaacagactcactctgtttctcctcagagggttgctctgtttct |
329 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28675212 |
cgctgaatcttcaagttctttgaaaaatctcaactttgaaactgaaacagactcactctgtttctcctcagagggttgctctgtttct |
28675299 |
T |
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