View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_low_29 (Length: 333)
Name: NF19084_low_29
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 660455 - 660780
Alignment:
| Q |
16 |
caacaacctccaatcgcgccgccatgaatagaagcctgcaccacacgtaacatgggggataaacagaactataacaaatcttccaacatatattaatttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
660455 |
caacaacctccaatcgcgccgccatgaatagaagcctgcaccacacgtaacatgggggataaacagaactatagcaaatcttccaacatatattaatttt |
660554 |
T |
|
| Q |
116 |
gcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaatatg-----------------acgtaaccaagct |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
660555 |
gcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaatatgaacttacattcaacaatacgtaaccaagct |
660654 |
T |
|
| Q |
199 |
ttcaacataatcctggacattgaaccaccaagattttttgattctctttacgcttttatctctcctattatagagaattgctgaactttcacaactggtt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
660655 |
ttcaacataatcctggacattgaaccaccaagattttttgattctctttatgcttttatctctccaattatagagaattgctgaactttcacaactggtt |
660754 |
T |
|
| Q |
299 |
ttcaataaatagtgtatcattcttctc |
325 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
660755 |
ttcaat-aatagtgtatcattcttctc |
660780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 22070827 - 22070781
Alignment:
| Q |
117 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
163 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
22070827 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
22070781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University