View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_3 (Length: 641)
Name: NF19084_low_3
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 217 - 605
Target Start/End: Complemental strand, 44667113 - 44666743
Alignment:
| Q |
217 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatatgccacaagaatactgtatttgat |
316 |
Q |
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| T |
44667113 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatat------------------ttgat |
44667032 |
T |
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| Q |
317 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
416 |
Q |
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| T |
44667031 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
44666932 |
T |
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| Q |
417 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaacaccctcaaaagaaaaacgctacatgatactttgatggaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44666931 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaacaccctcaaaagaaaaacgctacatgatactttgatggaa |
44666832 |
T |
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| Q |
517 |
aaataagaattaatgaaattcatgatggtgtgagtaatatgacagcacgccagcacccatattaatagcctctcaaacaacagaaatcc |
605 |
Q |
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| T |
44666831 |
aaataagaactaatgaaattcatgatgatgtgagtaatatgacagcacgccagcacccatattaatagcctctcaaacaacagaaatcc |
44666743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 44667332 - 44667182
Alignment:
| Q |
1 |
gtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtgaccctgatg |
100 |
Q |
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| T |
44667332 |
gtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtgaccctgatg |
44667233 |
T |
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| Q |
101 |
cacctcattcaagggttcttagaactcttcgtggtgaagacttttgaaatt |
151 |
Q |
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| T |
44667232 |
cacctcattcaagggttcttagaactcttcgtggtgaagacttttgaaatt |
44667182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 8374377 - 8374528
Alignment:
| Q |
1 |
gtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtgaccctgatg |
100 |
Q |
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| T |
8374377 |
gtgattggttggttgccggaacagctctaaccagcggaggagactttgttgagggctgctgagatgtggcggcagaggtctatgcatggtgaccctgatg |
8374476 |
T |
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| Q |
101 |
cacctcattcaagggttc----ttagaactcttcgtggtgaagacttttgaa |
148 |
Q |
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| T |
8374477 |
cacctcattcaagagttcttaattagaactcttcgtggtgaagacttttgaa |
8374528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 8375015 - 8375055
Alignment:
| Q |
567 |
cagcacccatattaatagcctctcaaacaacagaaatccca |
607 |
Q |
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| T |
8375015 |
cagcacccatattaatagcctctcaaacaatcgaaatccca |
8375055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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