View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_31 (Length: 322)

Name: NF19084_low_31
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_31
NF19084_low_31
[»] scaffold0224 (1 HSPs)
scaffold0224 (8-310)||(16185-16489)
[»] chr1 (5 HSPs)
chr1 (8-310)||(42921842-42922146)
chr1 (113-160)||(49495673-49495720)
chr1 (8-104)||(18800937-18801033)
chr1 (114-153)||(31425448-31425487)
chr1 (112-153)||(8347741-8347782)
[»] chr7 (3 HSPs)
chr7 (23-192)||(29890047-29890216)
chr7 (20-192)||(7188282-7188453)
chr7 (129-174)||(24817835-24817882)
[»] chr4 (2 HSPs)
chr4 (8-189)||(25357422-25357603)
chr4 (66-187)||(15032960-15033081)
[»] chr2 (3 HSPs)
chr2 (8-193)||(12342776-12342960)
chr2 (8-165)||(20147115-20147271)
chr2 (8-87)||(40699119-40699198)
[»] scaffold0008 (2 HSPs)
scaffold0008 (20-184)||(16845-17009)
scaffold0008 (94-184)||(6132-6222)
[»] chr3 (4 HSPs)
chr3 (100-192)||(28761884-28761978)
chr3 (13-82)||(23636845-23636914)
chr3 (23-82)||(23633278-23633337)
chr3 (134-190)||(1673687-1673743)
[»] chr8 (3 HSPs)
chr8 (8-174)||(14419558-14419725)
chr8 (42-191)||(31162011-31162159)
chr8 (113-153)||(30422892-30422932)
[»] chr6 (2 HSPs)
chr6 (66-192)||(22610832-22610960)
chr6 (100-192)||(28038164-28038256)


Alignment Details
Target: scaffold0224 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 16185 - 16489
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| || ||||||||||     
T  16185 ccaaaaatatgattatgttatattttttgctggaaaattcagggcccaaatttctccattcggccaccgatttttcacgtgcaaacagactgaaaaacaa 16284  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaacagtttggtcaagataa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  16285 cactcaaattcgggcccctgacagcaccattcgggccccgattttgacaaattcaaaacttcaattttgagtcattttcacaacagcttggtcaagataa 16384  T
Q  208 agtgatatatgttgtaatgtattcatctaaaagttggttaaataataaaccatttattctctttt--ataaattgtgcatgacataatttgttctctttt 305  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  16385 agtgatatatgttgcaatgtattcatctaaaagttggttaaataataaaacatttattctcttttgaataaattgtgcatgacataattcgttctctttt 16484  T
Q  306 tattg 310  Q
    |||||    
T  16485 tattg 16489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 42922146 - 42921842
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| || ||||||||||     
T  42922146 ccaaaaatatgattatgttatattttttgctggaaaattcagggcccaaatttctccattcggccaccgatttttcacgtgcaaacagactgaaaaacaa 42922047  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaacagtttggtcaagataa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  42922046 cactcaaattcgggcccctgacagcaccattcgggccccgattttgacaaattcaaaacttcaattttgagtcattttcacaacagcttggtcaagataa 42921947  T
Q  208 agtgatatatgttgtaatgtattcatctaaaagttggttaaataataaaccatttattctctttt--ataaattgtgcatgacataatttgttctctttt 305  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  42921946 agtgatatatgttgcaatgtattcatctaaaagttggttaaataataaaacatttattctcttttgaataaattgtgcatgacataattcgttctctttt 42921847  T
Q  306 tattg 310  Q
    |||||    
T  42921846 tattg 42921842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 49495673 - 49495720
Alignment:
Q  113 aaattcgggcccctgacagcaccattcgggccccgattttgccaaatt 160  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  49495673 aaattcgggccccggacagaaccattcgggccccgattttgacaaatt 49495720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 18800937 - 18801033
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaa 104  Q
    |||| ||||||||| ||||||||||| ||| ||  |||||||||| | |  ||  ||||||||||||| ||||||||||| | || |||||||||||    
T  18800937 ccaaaaatatgattctgttatattttctgccggcgaattcgggcctcgattttacccattcggccaccaatttttcacgtaccaacaggctgaaaaa 18801033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 31425448 - 31425487
Alignment:
Q  114 aattcgggcccctgacagcaccattcgggccccgattttg 153  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  31425448 aattcgggccccggacagctccattcgggccccgattttg 31425487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 8347741 - 8347782
Alignment:
Q  112 caaattcgggcccctgacagcaccattcgggccccgattttg 153  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  8347741 caaattcgggccccggacaacatcattcgggccccgattttg 8347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 29890047 - 29890216
Alignment:
Q  23 tgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcgggc 122  Q
    ||||||||||| ||||||  |||||||| ||| || |  || ||||||||||| ||||||  ||| | || |||||||||||||  ||||||||| ||||    
T  29890047 tgttatattttctgctggcgaattcgggtcccgaattcctcgattcggccaccaatttttgtcgtaccaacaggctgaaaaacaatactcaaatttgggc 29890146  T
Q  123 ccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaaca 192  Q
     || |||||||||||||||||||||||||||  | ||||||| || ||||||||| ||||||||||||||    
T  29890147 tccggacagcaccattcgggccccgattttgatagattcaaatctccaattttgagtcactttcacaaca 29890216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 7188453 - 7188282
Alignment:
Q  20 ttatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcg 119  Q
    |||||||||||||| | |||  ||||||||||||| |  ||| |  ||| ||||| ||||||||| || | || ||||||||||||  ||  ||||||||    
T  7188453 ttatgttatattttctcctgacaaattcgggccccgat-tttgctcttctgccactgatttttcatgtaccaacaggctgaaaaaccacagccaaattcg 7188355  T
Q  120 ggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaaca 192  Q
     ||||| |||||||||||||| ||||| |||||| || |||||||||||||||||||| ||||||||||||||    
T  7188354 tgccccggacagcaccattcgagccccaattttgacagattcaaaacttcaattttgagtcactttcacaaca 7188282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 24817835 - 24817882
Alignment:
Q  129 cagcaccattcgggccccgattttgccaaattca--aaacttcaattt 174  Q
    |||||||||||||| |||||||||| ||||||||  ||||||||||||    
T  24817835 cagcaccattcgggtcccgattttgacaaattcaacaaacttcaattt 24817882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 25357603 - 25357422
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| |||| |||| ||||||||||| |||||  ||||||||||||| || |  |||||||||||||| ||||||   || | || ||||||||||||||    
T  25357603 ccaaaaatacgattctgttatattttctgctgccaaattcgggccccgaattcctccattcggccaccaatttttgttgtaccaaaaggctgaaaaacag 25357504  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcaca 189  Q
    |||||||| || |||||| ||| ||||||||||  | ||||||||| || |||||||||| ||||||||| ||| |||||||    
T  25357503 cactcaaaatcaggccccggacggcaccattcgaccaccgattttgacagattcaaaactccaattttgagtcattttcaca 25357422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 15032960 - 15033081
Alignment:
Q  66 ttcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaa 165  Q
    |||| ||||||||||||||||| | || ||||||||||||  ||  ||||||||||||   |||||||||||||| |||||||||||  || ||||||||    
T  15032960 ttcgaccaccgatttttcacgtaccaacaggctgaaaaaccacagccaaattcgggccttggacagcaccattcgagccccgattttaacagattcaaaa 15033059  T
Q  166 cttcaattttgaatcactttca 187  Q
    || |||||| || | |||||||    
T  15033060 ctccaatttcgagttactttca 15033081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 12342776 - 12342960
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| |||||||||||||||| |||| |||||| ||||||||||||  |  ||| |  |||||||||||||||||||||| | || ||||| ||||||      
T  12342776 ccaaaaatatgattatgttattttttctgctggcaaattcgggccctgat-tttgctcttcggccaccgatttttcacgtaccaacaggctcaaaaacca 12342874  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaacag 193  Q
    |   |||||| ||| ||| |||||||||||||||||| |||||||| || ||||||||||  |||||||| ||| |||||||||||    
T  12342875 cggccaaatttgggacccagacagcaccattcgggcctcgattttgacagattcaaaactctaattttgagtcattttcacaacag 12342960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 20147115 - 20147271
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| ||||||| | ||||||||||| |||||| |||||  |||||| |  || | | ||| |||||||||||||||||| | || ||||||||||||      
T  20147115 ccaaaaatatgactctgttatattttctgctggcaaattatggccccgattttgttc-ttcagccaccgatttttcacgtaccaacaggctgaaaaacca 20147213  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaa 165  Q
    ||  |||||||||||||  || |||||||||||||||||||||||| || ||||||||    
T  20147214 cagccaaattcgggccctggatagcaccattcgggccccgattttgacagattcaaaa 20147271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 40699198 - 40699119
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgt 87  Q
    |||| ||||||||| ||||||||||| || ||| ||||||||||||| || |  ||||||||| |||| | |||||||||    
T  40699198 ccaaaaatatgattctgttatattttctgatggcaaattcgggccccgaattcctccattcgggcaccaaattttcacgt 40699119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 17009 - 16845
Alignment:
Q  20 ttatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcg 119  Q
    |||||||||||||| |||||| ||||||| ||| |    ||  ||||||||||| ||||||||||||| | || ||||| ||||||  ||  |||||| |    
T  17009 ttatgttatattttctgctggtaaattcgagcctcgcttttacccattcggccatcgatttttcacgtaccaaaaggctcaaaaaccacagccaaatttg 16910  T
Q  120 ggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactt 184  Q
    |||||| ||||||||||||| ||||||||||||| || ||| |||||| ||||||||| ||||||    
T  16909 ggccccggacagcaccattccggccccgattttgacatattaaaaactccaattttgagtcactt 16845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 6222 - 6132
Alignment:
Q  94 aggctgaaaaacagcactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactt 184  Q
    ||||||||||||  ||  |||||| ||||||| ||||||| ||||||||||||||||||| || |||||||||| |||||| || ||||||    
T  6222 aggctgaaaaaccacagccaaatttgggccccggacagcagcattcgggccccgattttgacatattcaaaactccaatttcgagtcactt 6132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 28761884 - 28761978
Alignment:
Q  100 aaaaacagcactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattca--aaacttcaattttgaatcactttcacaaca 192  Q
    |||||||||||||||||||||| |||  ||||||||||| |||| ||||||||| || |||||  ||||||||||||||| ||||||||||||||    
T  28761884 aaaaacagcactcaaattcgggtcccgaacagcaccatttgggctccgattttgacagattcagcaaacttcaattttgagtcactttcacaaca 28761978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 23636914 - 23636845
Alignment:
Q  13 aatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgattttt 82  Q
    |||||| || ||||||||||| |||||||||||||||||||| || |  |||||||||||||||||||||    
T  23636914 aatatgtttctgttatattttctgctggaaaattcgggccccgaattcctccattcggccaccgattttt 23636845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 23633337 - 23633278
Alignment:
Q  23 tgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgattttt 82  Q
    ||||||||||| |||||| |||||||| |||| || |  |||||||||||||||||||||    
T  23633337 tgttatattttctgctggcaaattcggaccccgaattcctccattcggccaccgattttt 23633278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 1673743 - 1673687
Alignment:
Q  134 ccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaa 190  Q
    |||||||| | | ||||||| |||||| |||||| ||||||||| ||||||||||||    
T  1673743 ccattcggccactgattttgacaaatttaaaactccaattttgattcactttcacaa 1673687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 14419558 - 14419725
Alignment:
Q  8 ccaagaatatgattatgttatattttttgctggaaaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacag 107  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||| || |  ||||||||||||| |||||||  ||  | || |  |  ||||||||    
T  14419558 ccaaaaatatgtttctgttatattttctgctggaaaattcgggccccgaattcctccattcggccacagatttttgccgaaccaacaaac-aaaaaacag 14419656  T
Q  108 cactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattca--aaacttcaattt 174  Q
    |||||||||||||||||| ||||   |||||||||| ||||||||| || |||||  ||||||||||||    
T  14419657 cactcaaattcgggccccagacaaatccattcgggctccgattttgacagattcagcaaacttcaattt 14419725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 31162159 - 31162011
Alignment:
Q  42 aaattcgggccccaaaattttccattcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcgggcccctgacagcaccattcgg 141  Q
    ||||||||||||| || |  ||||||| |||||||| ||||||||| | || ||||||||||||| ||  || |||||||| || |||| ||| ||||||    
T  31162159 aaattcgggccccgaattcctccattcagccaccgaattttcacgtaccaacaggctgaaaaaca-caggcatattcgggctccagacaacactattcgg 31162061  T
Q  142 gccccgattttgccaaattcaaaacttcaattttgaatcactttcacaac 191  Q
    ||||  |||| | || |||||||||| ||||||| |||||||||||||||    
T  31162060 gcccgaatttcgacagattcaaaactccaattttaaatcactttcacaac 31162011  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 30422932 - 30422892
Alignment:
Q  113 aaattcgggcccctgacagcaccattcgggccccgattttg 153  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  30422932 aaattcgggccctggacagcaccattcgggccccgattttg 30422892  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 22610960 - 22610832
Alignment:
Q  66 ttcggccaccgatttttcacgtgcaaagaggctgaaaaacagcactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattc--aa 163  Q
    |||||||||||||||||||||| | || || |||||||| | |||| ||| || |||||  || |||| |||||| |||| ||||||| ||  |||   |    
T  22610960 ttcggccaccgatttttcacgtaccaaaagcctgaaaaataacacttaaaatcaggccctggaaagcatcattcgtgccctgattttggcaggttccaga 22610861  T
Q  164 aacttcaattttgaatcactttcacaaca 192  Q
    |||||||||||||| |||||||| |||||    
T  22610860 aacttcaattttgagtcactttcgcaaca 22610832  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 28038164 - 28038256
Alignment:
Q  100 aaaaacagcactcaaattcgggcccctgacagcaccattcgggccccgattttgccaaattcaaaacttcaattttgaatcactttcacaaca 192  Q
    ||||||| |||||||| | ||| ||| |||||||||||||   | || |||||  || |||||||||| ||||||| | ||||||||||||||    
T  28038164 aaaaacaacactcaaaattgggtcccggacagcaccattcacccaccaattttaacagattcaaaactccaattttaagtcactttcacaaca 28038256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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