View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_low_32 (Length: 322)
Name: NF19084_low_32
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 58 - 304
Target Start/End: Original strand, 19070483 - 19070729
Alignment:
| Q |
58 |
tgttggtatactttactcatcattcacttttctcataccgacgaatattatggtcaaagttcttaccgttttctggtaccatttatgcgtcaaattcaag |
157 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19070483 |
tgttagtatactttactcatcattcacttttctcataccgacgaatattatggtcgaagttcttaccgttttctggtaccatttatgcgtcaaattcaag |
19070582 |
T |
|
| Q |
158 |
aacgatccatggatgaccaaaagaatgtagacaataccaagaagatggtgtgagtaccagaatgcattaaagcctgttaatcggttgaaaggcgaaggaa |
257 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19070583 |
aacgatccatgaatgaacagaagaatgtagacaataccaagaagatgatgtgagtaccagaatgcattaaagcctgttaatctgttgaaaggcgaaggaa |
19070682 |
T |
|
| Q |
258 |
gatttactgcatttcttcgaaattggctagttgctagtgtaaacgat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19070683 |
gatttactgcatttcttcgaaattggctagttgctagtgtaaacgat |
19070729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University