View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_33 (Length: 314)
Name: NF19084_low_33
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 505602 - 505323
Alignment:
| Q |
17 |
atcaggagacaaatattacaattaagcctaattatttctagcttggtcttctagtttttctctctgaataatattagactaatatattttgttaatgatg |
116 |
Q |
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| T |
505602 |
atcaggagacaaatattacatttaagcctaattatttctagctcggtcttctagtttttctctctaaataatattagactaatatatgttgttaatgatg |
505503 |
T |
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| Q |
117 |
taatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
505502 |
taatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttctctgttgcgtatttcttat |
505403 |
T |
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| Q |
217 |
gcccttcaaacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatatagacaa |
296 |
Q |
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| T |
505402 |
gcccttcaaatgacaccatgattgagagttgcaaagagccctctatataccgcaaattcagctttaaagaatatagacaa |
505323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 16702318 - 16702189
Alignment:
| Q |
127 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
226 |
Q |
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| T |
16702318 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
16702219 |
T |
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| Q |
227 |
cgagaccatgattgagagttgcaaagagcc |
256 |
Q |
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| T |
16702218 |
tgagagtgtgatagagagctgcaaaaagcc |
16702189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 17676554 - 17676425
Alignment:
| Q |
127 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
226 |
Q |
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|||||||||| |||||| | || ||||||||||||||||||||||| ||||| |||| ||| |||||||| ||| | ||||||||||| ||||||||||| |
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| T |
17676554 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
17676455 |
T |
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| Q |
227 |
cgagaccatgattgagagttgcaaagagcc |
256 |
Q |
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|||| |||| ||||| |||||| |||| |
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| T |
17676454 |
tgagagtgtgatagagagctgcaaaaagcc |
17676425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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