View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_36 (Length: 304)
Name: NF19084_low_36
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 34473393 - 34473547
Alignment:
| Q |
144 |
ttggaagaaacaaaccagggtctatgagttcactaacaagctgaatctgtatcccttgaccaacaccattaaagaaatactccaactgatcctcaacctc |
243 |
Q |
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| T |
34473393 |
ttggaagaaacaaaccagggtctatgagttcactaacaagctgaatctgtatcccttgaccaacaccattaaagaaatactccaactgatcctcaacctc |
34473492 |
T |
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| Q |
244 |
ctcaaccacactacctttcattttctttcttatcatcaccactgctttcatctct |
298 |
Q |
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| T |
34473493 |
ctcaaccacactacctttcattttctttcttatcatcaccactgctttcacctct |
34473547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34473250 - 34473322
Alignment:
| Q |
1 |
attatctttatgttacgaagatatttgatttctnnnnnnnngtgtctgattgtgtgggacactactttttgat |
73 |
Q |
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| T |
34473250 |
attatctttatgttacgaagatatttgatttctaaaaaaaagtgtctgattgtgtgggacactactttttgat |
34473322 |
T |
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