View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_4 (Length: 639)

Name: NF19084_low_4
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_4
NF19084_low_4
[»] scaffold0094 (1 HSPs)
scaffold0094 (496-621)||(4447-4572)
[»] chr3 (2 HSPs)
chr3 (496-619)||(27870259-27870382)
chr3 (526-586)||(16642569-16642629)
[»] chr6 (2 HSPs)
chr6 (496-621)||(19547085-19547210)
chr6 (510-586)||(14970332-14970408)
[»] chr4 (2 HSPs)
chr4 (496-621)||(18556660-18556785)
chr4 (510-581)||(11098183-11098254)
[»] scaffold0290 (1 HSPs)
scaffold0290 (496-620)||(13852-13976)
[»] chr2 (2 HSPs)
chr2 (501-621)||(18987171-18987291)
chr2 (510-559)||(24786414-24786463)
[»] chr8 (1 HSPs)
chr8 (8-58)||(5094485-5094535)


Alignment Details
Target: scaffold0094 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 496 - 621
Target Start/End: Complemental strand, 4572 - 4447
Alignment:
Q  496 tattataggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccct 595  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4572 tattctaggatctatatatactttattatgatatcataccatattcctcattcttagtcttaagttgtttacttattcgttatcataacatctcctccct 4473  T
Q  596 ttacaactaggttctacctcaccatc 621  Q
    ||||||||||||||||||| ||||||    
T  4472 ttacaactaggttctacctaaccatc 4447  T

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Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 27870382 - 27870259
Alignment:
Q  496 tattataggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccct 595  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||    
T  27870382 tattctaggatctatatatactttattatgatatcataccatattcctcattcttagtcttaagttgtttacttattcgttatcataacatctcctctct 27870283  T
Q  596 ttacaactaggttctacctcacca 619  Q
    ||||||||||||||||||||||||    
T  27870282 ttacaactaggttctacctcacca 27870259  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 586
Target Start/End: Original strand, 16642569 - 16642629
Alignment:
Q  526 atatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacat 586  Q
    ||||||||||||||||| ||||||| |||| | ||||||| |||||||| |||||| ||||    
T  16642569 atatcataccatattcctcattcttggtctcaagttgttttcttattcgctatcattacat 16642629  T

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Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 496 - 621
Target Start/End: Complemental strand, 19547210 - 19547085
Alignment:
Q  496 tattataggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccct 595  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  19547210 tattctaggatctatatatactttattatgatattataccatatttctcattcttagtcttaagttgtttacttattcgttatcataacatctcctccct 19547111  T
Q  596 ttacaactaggttctacctcaccatc 621  Q
    |||||| |||||||||||| ||||||    
T  19547110 ttacaaataggttctacctaaccatc 19547085  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 586
Target Start/End: Original strand, 14970332 - 14970408
Alignment:
Q  510 tatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacat 586  Q
    |||||| |||||| ||||| |||||| ||||||  ||||||||||||| | | ||||||| ||| ||||||| ||||    
T  14970332 tatatactttattctgataccataccctattcctaattcttagtcttaagatatttacttgttcattatcattacat 14970408  T

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Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 496 - 621
Target Start/End: Complemental strand, 18556785 - 18556660
Alignment:
Q  496 tattataggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccct 595  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  18556785 tattctaggatctatatatactttattatgatatcataccatatttctcattcttagtcttaatttgtttacttattcgttatcataacatctcctccct 18556686  T
Q  596 ttacaactaggttctacctcaccatc 621  Q
    |||||| |||||||||||| ||||||    
T  18556685 ttacaaataggttctacctaaccatc 18556660  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 581
Target Start/End: Complemental strand, 11098254 - 11098183
Alignment:
Q  510 tatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcat 581  Q
    |||||| |||||| |||||||||||| |||||| |||||||||||||| | | ||||||| ||| |||||||    
T  11098254 tatatactttattttgatatcataccttattcctcattcttagtcttaagatatttacttgttcattatcat 11098183  T

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Target: scaffold0290 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 496 - 620
Target Start/End: Complemental strand, 13976 - 13852
Alignment:
Q  496 tattataggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccct 595  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| | |||  |    
T  13976 tattctagtatctatatatactttattatgatatcataccatattcctcattcttggtcttaagttgtttacttattcgttatcataacatctactctat 13877  T
Q  596 ttacaactaggttctacctcaccat 620  Q
    |||||| ||||||||||||||||||    
T  13876 ttacaagtaggttctacctcaccat 13852  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 501 - 621
Target Start/End: Complemental strand, 18987291 - 18987171
Alignment:
Q  501 taggatctatatataatttattatgatatcataccatattccacattcttagtcttatgttgtttacttattcgttatcataacatttcctccctttaca 600  Q
    ||||||||||||||| |||||||||| ||||||||||||||| || |||| |||||| ||||||||| |||||||||||||||||| | | | |||||||    
T  18987291 taggatctatatatactttattatgacatcataccatattcctcaatcttggtcttaagttgtttacatattcgttatcataacatctaccctctttaca 18987192  T
Q  601 actaggttctacctcaccatc 621  Q
    |||||||||||||||||||||    
T  18987191 actaggttctacctcaccatc 18987171  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 24786414 - 24786463
Alignment:
Q  510 tatataatttattatgatatcataccatattccacattcttagtcttatg 559  Q
    |||||| |||||| |||||||||||  |||||| ||||||||||||||||    
T  24786414 tatatactttattctgatatcatactctattcctcattcttagtcttatg 24786463  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 5094535 - 5094485
Alignment:
Q  8 gaaaataaaaatcgtacgctcccttacatttctaataaattttagaacttc 58  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  5094535 gaaaataaaaatcgtatactcccttacatttctaataaattttagaacttc 5094485  T

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