View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_40 (Length: 288)

Name: NF19084_low_40
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_40
NF19084_low_40
[»] chr7 (2 HSPs)
chr7 (121-198)||(9689604-9689681)
chr7 (208-280)||(9689728-9689800)
[»] chr4 (2 HSPs)
chr4 (121-198)||(13555981-13556058)
chr4 (208-280)||(13556105-13556177)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 9689604 - 9689681
Alignment:
Q  121 attattctatactgattttttaagaaaaaatatgctatattcatatataactttaatgatcactgtgtattttaacat 198  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9689604 attattctatactgattttttaagaagaaatatgctatattcatatataactttaatgatcactgtgtattttaacat 9689681  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 9689728 - 9689800
Alignment:
Q  208 ctcaaaataaacatcgtaaattatttttgggatccgaactccaactctcaaatactataatgatgtctctgct 280  Q
    ||||||||| |||  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  9689728 ctcaaaatagacactgtaaattatttttgggatccaaactccaaccctcaaatactataatgatgtctctgct 9689800  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 13555981 - 13556058
Alignment:
Q  121 attattctatactgattttttaagaaaaaatatgctatattcatatataactttaatgatcactgtgtattttaacat 198  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13555981 attattctatactgattttttaagaagaaatatgctatattcatatataactttaatgatcactgtgtattttaacat 13556058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 13556105 - 13556177
Alignment:
Q  208 ctcaaaataaacatcgtaaattatttttgggatccgaactccaactctcaaatactataatgatgtctctgct 280  Q
    ||||||||| |||  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  13556105 ctcaaaatagacactgtaaattatttttgggatccaaactccaaccctcaaatactataatgatgtctctgct 13556177  T

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