View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_49 (Length: 265)
Name: NF19084_low_49
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 1336031 - 1335910
Alignment:
| Q |
4 |
atgaccttgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcctccaccccctgcatctgc |
103 |
Q |
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| T |
1336031 |
atgaccttgaagcttcacaactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcctccaccccctgtatctgc |
1335932 |
T |
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| Q |
104 |
tgcatttgaatgaagctatttt |
125 |
Q |
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| T |
1335931 |
tgcttttgaatgaacctatttt |
1335910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 1335773 - 1335663
Alignment:
| Q |
139 |
ttaataaatttcgtaggtatactgaaatattatcgattgtactattaaataatttgagaacgcataggcttattgtgagttctattgaataaattgagat |
238 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1335773 |
ttaataaatttcgtaggtatactaaaatatt---gattgtactattaaataatttgagaacgcataggcttattgtgagttctattgaataaattgagat |
1335677 |
T |
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| Q |
239 |
tgagtgaatatatt |
252 |
Q |
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||||| |||||||| |
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| T |
1335676 |
tgagtaaatatatt |
1335663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 1264403 - 1264516
Alignment:
| Q |
4 |
atgaccttgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcctccaccccctgcatctgc |
103 |
Q |
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|||||||||||||||||| ||||||||| ||||| || |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1264403 |
atgaccttgaagcttcacaactatatcctaattataattacatgtccattgatcaacttcttgataaatttttggttgatcctccaccccctgcatctgc |
1264502 |
T |
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| Q |
104 |
tgcatttgaatgaa |
117 |
Q |
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| | |||||||||| |
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| T |
1264503 |
ttcctttgaatgaa |
1264516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 1284094 - 1284143
Alignment:
| Q |
69 |
aaatttcttgttgatcctccaccccctgcatctgctgcatttgaatgaag |
118 |
Q |
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| T |
1284094 |
aaatttcttgttgatcctccaccccctgcatctgctgcatttgaatgaag |
1284143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 1320519 - 1320426
Alignment:
| Q |
4 |
atgaccttgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcctccaccccctgc |
97 |
Q |
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|||| ||||||||||||| |||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
1320519 |
atgatcttgaagcttcacaactataccctggttacaactatacatcaattgatcaacttcttgataaatttcttgttgaccctataccccctgc |
1320426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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