View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_5 (Length: 603)
Name: NF19084_low_5
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_5 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 588
Target Start/End: Original strand, 19369361 - 19369940
Alignment:
| Q |
12 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
111 |
Q |
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| T |
19369361 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
19369460 |
T |
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| Q |
112 |
aaaatacaacaaattcaaggaacaccaataatgagctgggaaaattatata----gccaggagaatgcatagcagaactaaactattgcgtataacagga |
207 |
Q |
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| T |
19369461 |
aaaatacaacaaattcaaggaacaccaat--tgagctgggaaaattatatatatagccaggagaatgcatagcagaactaaactattgcgtataacagga |
19369558 |
T |
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| Q |
208 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19369559 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaactatagttcaagatgtagaattcaaagaaagatcaatgtttctaaa |
19369658 |
T |
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| Q |
308 |
gcatatatcataaaaagcaaaggataggttattgtacacaaacaaacatt-ctcaagattgagaatgaattcagaaagtagagtcacggacttattggag |
406 |
Q |
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| T |
19369659 |
gcatatatcataaaaatcaaaggataggttattgtacacaaacaaacatttctcaagattgagaatgaattcagaaagtagagtctcggacttattggag |
19369758 |
T |
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| Q |
407 |
ttattataatttttgtgacaagcataaggctgctgctattgcacactctatccattatcattcaaataaataaaagctgacatgtggtagaattcctttg |
506 |
Q |
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| T |
19369759 |
ttatgataattgttgtgacaagcttaaggctgctgctattgcacgctctatccattatcattcaaataaataaaagttgacatgcggtggaattcctttg |
19369858 |
T |
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| Q |
507 |
gcagagagataattccttgatcgtttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagt |
588 |
Q |
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| T |
19369859 |
gcagagagataattccttgatcgtttggagttttgtatttgtatctactgattcggcaatctgaattgtcatggtgtttagt |
19369940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 455 - 582
Target Start/End: Original strand, 1988 - 2115
Alignment:
| Q |
455 |
tatccattatcattcaaataaataaaagctgacatgtggtagaattcctttggcagagagataattccttgatcgtttggagttttgtatttgtatctac |
554 |
Q |
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| T |
1988 |
tatccattatcattcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttggagctttgtatttgtatctaa |
2087 |
T |
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| Q |
555 |
tgattcggcaatctgaattgtcatggtg |
582 |
Q |
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| T |
2088 |
gaattcggcactctgaattgtcatggtg |
2115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 1855 - 1912
Alignment:
| Q |
255 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
312 |
Q |
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| T |
1855 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
1912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 455 - 582
Target Start/End: Original strand, 3534 - 3661
Alignment:
| Q |
455 |
tatccattatcattcaaataaataaaagctgacatgtggtagaattcctttggcagagagataattccttgatcgtttggagttttgtatttgtatctac |
554 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | ||||||||| |||| | | |||||||| ||| | ||||||| |||||||||||||||| |
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| T |
3534 |
tatccattatcattcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttggagctttgtatttgtatctaa |
3633 |
T |
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| Q |
555 |
tgattcggcaatctgaattgtcatggtg |
582 |
Q |
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| T |
3634 |
gaattcggcactctgaattgtcatggtg |
3661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 3401 - 3458
Alignment:
| Q |
255 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
312 |
Q |
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| T |
3401 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
3458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 387
Target Start/End: Original strand, 49856258 - 49856405
Alignment:
| Q |
238 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcatatatcataaaaagcaaaggataggtt |
337 |
Q |
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| T |
49856258 |
ctaaaagaccccataaagacaaaggtacagttccagatatagaatcgaaagaca--tcaacatttctaaagcatatatcatcaaaattaaaggataaatt |
49856355 |
T |
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| Q |
338 |
attgtacacaaacaaacattctcaagattgagaatgaattcagaaagtag |
387 |
Q |
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| T |
49856356 |
attgtacacaaacaaacagtctcaagattcagaatgaatttataaagtag |
49856405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 580
Target Start/End: Original strand, 49972939 - 49973051
Alignment:
| Q |
468 |
tcaaataaataaaagctgacatgtggtagaattcctttggcagagagataattccttgatcgtttggagttttgtatttgtatctactgattcggcaatc |
567 |
Q |
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||||||||||||||| | ||||||||| |||||| || |||| | |||||||||||| || ||||||| |||||| ||||||||| ||| |||| || |
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| T |
49972939 |
tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatctaggaatttggcactc |
49973038 |
T |
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| Q |
568 |
tgaattgtcatgg |
580 |
Q |
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| T |
49973039 |
tgaattttcatgg |
49973051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 49867879 - 49867977
Alignment:
| Q |
452 |
ctctatccattatcattcaaataaat--aaaagctgacatgtggtagaattcctttggcagagagataattccttgatcgtttggagttttgtatttgt |
548 |
Q |
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|||||||||||||||||||||||||| ||||| | |||||||| ||||||||| |||| | |||||||||| ||| | ||||||| ||| ||||||| |
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| T |
49867879 |
ctctatccattatcattcaaataaatagaaaagtttacatgtggctgaattccttgggcatacagataattccatgaacatttggagctttatatttgt |
49867977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 49856468 - 49856517
Alignment:
| Q |
452 |
ctctatccattatcattcaaataaataaaagctgacatgtggtagaattc |
501 |
Q |
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| T |
49856468 |
ctctatacattatcattcaaataaatagaagtggacatgtggttgaattc |
49856517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 20130826 - 20130760
Alignment:
| Q |
238 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttct |
304 |
Q |
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|||||||||| | |||||||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
20130826 |
ctaaaagacttcctaaagacaaaggtatagttccagataatgaattcaaagagagatcaatgtttct |
20130760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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