View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_52 (Length: 256)
Name: NF19084_low_52
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 51208091 - 51208324
Alignment:
| Q |
4 |
attaacaaaaagggactgccacaagcagaagcagtactgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaaagt |
103 |
Q |
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| T |
51208091 |
attaacaaaaagggactgccacaagcagaagcagtgctgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaaagt |
51208190 |
T |
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| Q |
104 |
acatgtgttgctttggtgaataatttaattaggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51208191 |
acatgtgttgctttggtgaataatttaattaggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatc |
51208290 |
T |
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| Q |
204 |
tatgtctactaaaagaagtacataaagggagagg |
237 |
Q |
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|||||||||||||||||||| |||| |||||||| |
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| T |
51208291 |
tatgtctactaaaagaagtatataatgggagagg |
51208324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43430514 - 43430750
Alignment:
| Q |
1 |
aacattaacaaaaagggactgccacaagcagaagcagtactgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaa |
100 |
Q |
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| T |
43430514 |
aacattaacaaaaagggactgccacaagcagaagcagtgctgaaacttactcatatgagcatgacaaagttgcaaatgaatacttgaatgacacacagaa |
43430613 |
T |
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| Q |
101 |
agtacatgtgttgctttggtgaataatttaattaggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccaca |
200 |
Q |
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| T |
43430614 |
agtacatgtgttgctttggtgaataatttaattagaaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgaccacaccaca |
43430713 |
T |
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| Q |
201 |
atctatgtctactaaaagaagtacataaagggagagg |
237 |
Q |
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||||||||||||||||||||||| |||| |||||||| |
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| T |
43430714 |
atctatgtctactaaaagaagtatataatgggagagg |
43430750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6255729 - 6255503
Alignment:
| Q |
1 |
aacattaacaaaaagggactgccacaagcagaagcagtactgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6255729 |
aacattaacaaaaagggactcccacaagcagaagcagtgctgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaa |
6255630 |
T |
|
| Q |
101 |
agtacatgtgttgctttggtgaataatttaattaggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccaca |
200 |
Q |
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| T |
6255629 |
aatacatgtgttgctttggtgaataatttaatttggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccaca |
6255530 |
T |
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| Q |
201 |
atctatgtctactaaaagaagtacata |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6255529 |
atctatgtctactaaaagaagtacata |
6255503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 43956431 - 43956241
Alignment:
| Q |
17 |
gactgccacaagcagaagcagtactgaaacttactcagatgagcatgacaaagttgcaaatgtatacttgaatgacacacagaaagtacatgtgttgctt |
116 |
Q |
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||||||||||||||||||| || | |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| | |
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| T |
43956431 |
gactgccacaagcagaagctgtgcagaaacttactcacatgagcatgacaaggttgcaaatatatacttgaatgacacacagaaagtgcatgtgttgcct |
43956332 |
T |
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| Q |
117 |
tggtgaataatttaattaggaaaatgaagaatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatg |
207 |
Q |
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||||||||| || || |||||||||||||||| | |||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
43956331 |
tggtgaatatttcaactaggaaaatgaagaattataagcactttataaatcacaactttcaaaatcaatgttgtccacactgcaatctatg |
43956241 |
T |
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