View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_6 (Length: 581)
Name: NF19084_low_6
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 40942692 - 40942131
Alignment:
| Q |
1 |
taaggataagtttgttccaacattcaatgaaacaaaacctctgatccaaaggatctttaatagaccaccataagtgggaagtatctgcatgattgattga |
100 |
Q |
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| T |
40942692 |
taaggacaagtttgttccaacattcaatgaaacaaaacctctgatccaaaggatctttaatagaccaccataagtgggaagtatctgcatgattgattga |
40942593 |
T |
|
| Q |
101 |
gataataaaaccaagagcttgtctaacttgtcacactgcaaatcgaaagggcatcaagccattnnnnnnntaaactgcactaagaggatcaaagtatgct |
200 |
Q |
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| T |
40942592 |
gataataaaaccaagagcttgtctaacttgtcacattgcaaatcgaaagggcatcaagccattaacaaaataaactgcactaagaggatcaaagtatgat |
40942493 |
T |
|
| Q |
201 |
atcctttgctgtggttttttgggtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatg |
300 |
Q |
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| T |
40942492 |
atcctttgctgtggttttttgggtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatg |
40942393 |
T |
|
| Q |
301 |
tgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagca |
400 |
Q |
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| T |
40942392 |
tgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagca |
40942293 |
T |
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| Q |
401 |
catcaagattttattgattgaaacaagttttaaaattggaatgaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942292 |
catcaagattttattgattgaaacaagttttaaaattggaaggaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaa |
40942193 |
T |
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| Q |
501 |
cagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctatgtggatca |
562 |
Q |
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| T |
40942192 |
cagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctatgtggatca |
40942131 |
T |
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