View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_62 (Length: 238)

Name: NF19084_low_62
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_62
NF19084_low_62
[»] chr1 (2 HSPs)
chr1 (1-113)||(7742956-7743068)
chr1 (106-221)||(7742615-7742727)
[»] chr3 (1 HSPs)
chr3 (4-223)||(40864398-40864605)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7743068 - 7742956
Alignment:
Q  1 ctaacagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgtatccttcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743068 ctaacagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgtatccttcttt 7742969  T
Q  101 ccatctcttcaag 113  Q
    |||||||||||||    
T  7742968 ccatctcttcaag 7742956  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 7742727 - 7742615
Alignment:
Q  106 tcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgtgctctccctctattagtattatcatcttcgtcttgcacatcaggaccga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||    
T  7742727 tcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgcgctctccctctattagtattatcatcttcgtcttgcacatc---accga 7742631  T
Q  206 taatgaagcctgcatg 221  Q
    ||||||||||||||||    
T  7742630 taatgaagcctgcatg 7742615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 40864605 - 40864398
Alignment:
Q  4 acagatggcaaaagtgattgttgttctacatctgtagtttcttcatcatattcttcagccaaccgctgctttccatatctctcatgtatccttctttcca 103  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||| |||||||||||| |||    
T  40864605 acagatggcaaaagtgcttgctgttctacatctgtagtttcttcatcgtattct---gccaaccgctgctttccatatctctcttgtatccttcttgcca 40864509  T
Q  104 tctcttcaaggtcttcatgatcttcttggtgtggtggctggtgatggtgatgtgctctccctctattagtattatcatcttcgtcttgcacatcaggacc 203  Q
    ||||||||||||||||||||||||||||||| ||||||   ||   |||| |||  || ||||      |||||||||||||||||||||||||||| ||    
T  40864508 tctcttcaaggtcttcatgatcttcttggtggggtggc---tgtctgtgacgtggccttcctc------tattatcatcttcgtcttgcacatcaggccc 40864418  T
Q  204 gataatgaagcctgcatgtg 223  Q
     | |||||||||||||||||    
T  40864417 aacaatgaagcctgcatgtg 40864398  T

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