View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_65 (Length: 236)
Name: NF19084_low_65
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_65 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 8176284 - 8176503
Alignment:
| Q |
17 |
tctcaactattctctgcccaaagtcataagttgttatcaaggttgtctccttctgaagcttcttatgtcataaagacaataagggcttggggcaattgtt |
116 |
Q |
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| T |
8176284 |
tctcaactatgctctgcccaaagtcataagttgttatcaagcttgtctccttctgaagcttcttatgtcataaagacaataagggcttggggcaattgtt |
8176383 |
T |
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| Q |
117 |
tcggaatgggcctcaacccacatcatagatccaatgcatgactacacattaatcgataatccgtgtcattcaagaaaacatagaagacttcatgcgtgcc |
216 |
Q |
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| T |
8176384 |
tcggaatgggcctcaacccacatcacaaatccaatgcatgactacacattaaccgataatccacgtcattcaagaaaacatagaagatttcatgcgtgcc |
8176483 |
T |
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| Q |
217 |
tcactgcacagaagcgcatc |
236 |
Q |
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| T |
8176484 |
tcactgcacagaagcgcatc |
8176503 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 11748516 - 11748480
Alignment:
| Q |
72 |
aagcttcttatgtcataaagacaataagggcttgggg |
108 |
Q |
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| T |
11748516 |
aagcttcttacgtcataaagacgataagggcttgggg |
11748480 |
T |
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