View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_low_8 (Length: 526)
Name: NF19084_low_8
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 27244100 - 27243603
Alignment:
| Q |
8 |
attatactgtgatagtaaatcagcgttgcatatagctcaaaatcctgtgtttcatgaacgaacaaagcatattgaagctgattgtcactttgtccgtgat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27244100 |
attatactgtgatagtaaatcagcgttgcatatagctcaaaatcctgtgtttcatgaacgaacaaagcatattgaagctgattgtcactttgtccgtgat |
27244001 |
T |
|
| Q |
108 |
gccgtgatggctggaattatctgtccagtgtatgttcctacatcagtacaattagcggacatttttacaaaggccttgggaaaagcacaatttgagttcc |
207 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27244000 |
gccgtggtggctggaattatctgtccactgtatgttcctacatcagtacaattagcggacatttttacaaaggccttgggaaaagcacaatttgagttcc |
27243901 |
T |
|
| Q |
208 |
tccttcgcaagttaggcattcgagatcttcatgctccaacttgannnnnnntattggg-----------attattgttatttatttcagattaatgtggt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
27243900 |
tccttcgcaagttaggcattcgagatcttcatgctccaacttgagggggggtattgggattattgtgatattattgttatttatttcagattaatgtggt |
27243801 |
T |
|
| Q |
297 |
gctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaatccctaaggcttgtagatatgtaacagtctat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
27243800 |
gctactgagtgttgcagttaccttatatttaggagtagcttgattatagttgtgattaatggctggaatccctaaggcttgtagatatgtaacagtctgt |
27243701 |
T |
|
| Q |
397 |
aacagttgattataatgtg--tatatatatagtggtcctgatgaatgaacagggacacacaaattcaaagaattatattgtggtgaaatttaacagaaa |
493 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
27243700 |
aacagttgattataatgtgtatatatatatagtggtcctgatgaatgaagggagacacac-aattcaaagaattctattgtggtgaaatttatcagaaa |
27243603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 266 - 486
Target Start/End: Complemental strand, 27248663 - 27248442
Alignment:
| Q |
266 |
attattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
27248663 |
attattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttgtgattaatggctggaat |
27248564 |
T |
|
| Q |
366 |
ccctaaggcttgtagatatgtaacagtctataacagttgattataatgtgtatata--tatagtggtcctgatgaatgaacagggacacacaaattcaaa |
463 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||| |
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|
| T |
27248563 |
ccctaaggcttgtagatatgtaacagtctgtaacagttgattataatgtgtatatatatatagtggtcctgatgaatgaagggagacacac-aattcaaa |
27248465 |
T |
|
| Q |
464 |
gaattatattgtggtgaaattta |
486 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
27248464 |
gaattctattgtggtgaaattta |
27248442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 20777568 - 20777609
Alignment:
| Q |
210 |
cttcgcaagttaggcattcgagatcttcatgctccaacttga |
251 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
20777568 |
cttcgcaagttgggcattcgagatcctcatgctccaacttga |
20777609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 42103664 - 42103178
Alignment:
| Q |
8 |
attatactgtgatagtaaatcagcgttgcatatagctcaaaatcctgtgtttcatgaacgaacaaagcatattgaagctgattgtcactttgtccgtgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42103664 |
attatactgtgatagtaaatcagcgttgcatatagctcaaaatcctgtgtttcatgaacgaacaaagcatattgaagctgattgtcactttgtccgtgat |
42103565 |
T |
|
| Q |
108 |
gccgtgatggctggaattatctgtccagtgtatgttcctacatcagtacaattagcggacatttttacaaaggccttgggaaaagcacaatttgagttcc |
207 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42103564 |
gccgtggtggctggaattatctgtccactgtatgttcctacatcagtacaattagcggacatttttacaaaggccttgggaaaagcacaatttgagttcc |
42103465 |
T |
|
| Q |
208 |
tccttcgcaagttaggcattcgagatcttcatgctccaacttgannnnnnntattggg-----------attattgttatttatttcagattaatgtggt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42103464 |
tccttcgcaagttaggcattcgagatcttcatgctcca----gagggggggtattgggattattgtgatattattgttatttatttcagattaatgtggt |
42103369 |
T |
|
| Q |
297 |
gctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaatccctaaggcttgtagatatgtaacagtctat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42103368 |
gctactgagtgttgcagttaccttatatttaggagtagcttgattatagttgtgattaatggctggaatccctaaggcttgtagatatgtaacagtctgt |
42103269 |
T |
|
| Q |
397 |
aacagttgattataatgtg--tatatatatagtggtcctgatgaatgaacagggacacacaaattcaaagaattatattgtggtgaaattta |
486 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
42103268 |
aacagttgattataatgtgtatatatatatagtggtcctgatgaatgaagggagacacac-aattcaaagaattctattgtggtgaaattta |
42103178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 266 - 486
Target Start/End: Complemental strand, 42108227 - 42108006
Alignment:
| Q |
266 |
attattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42108227 |
attattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttgtgattaatggctggaat |
42108128 |
T |
|
| Q |
366 |
ccctaaggcttgtagatatgtaacagtctataacagttgattataatgtgtatata--tatagtggtcctgatgaatgaacagggacacacaaattcaaa |
463 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
42108127 |
ccctaaggcttgtagatatgtaacagtctgtaacagttgattataatgtgtatatatatatagtggtcctgatgaatgaagggagacacac-aattcaaa |
42108029 |
T |
|
| Q |
464 |
gaattatattgtggtgaaattta |
486 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
42108028 |
gaattctattgtggtgaaattta |
42108006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 266 - 489
Target Start/End: Original strand, 5105916 - 5106138
Alignment:
| Q |
266 |
attattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaat |
365 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
5105916 |
attattgttatttatttcatattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagtttgattatagttgtgattaatggctggaat |
5106015 |
T |
|
| Q |
366 |
ccctaaggcttgtagatatgtaacagtctataacagttgattataatgtgtatatatatagtggtcctgatgaatgaacagggacacacaaattcaaaga |
465 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
5106016 |
ccctaagtcttgtagatatgtaacagtctgtaacagttgattataatgtgtatatatatagtggtcctgatgaatgaacagagacacac-aattcaaaga |
5106114 |
T |
|
| Q |
466 |
attatattgtggtgaaatttaaca |
489 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
5106115 |
attctattgtggtgaaatttaaca |
5106138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 390
Target Start/End: Original strand, 15001290 - 15001598
Alignment:
| Q |
68 |
aacaaagcatattgaagctgattgtcactttgtccgtgatgccgtgatggctggaattatctgtccagtgtatgttcctacatcagtacaattagcggac |
167 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15001290 |
aacaaagcatattgaagctcattgtcacttt--------tcccgtgatggctggaattatctgcccaatgtatgttcctacatcggtacaattagcggac |
15001381 |
T |
|
| Q |
168 |
atttttacaaaggccttgggaaaagcacaatttgagttcctccttcgcaagttaggcattcgagatcttcatgctccaacttgannnnnnntattgggat |
267 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||||||| ||| |||||| | |||| ||| |||||| |||||||||| | |||| |
|
|
| T |
15001382 |
gtttttacaaatgccttgggaaaatcacaatttacgttcctcattctcaagttggccattggagctcttcacactccaacttgggggg-----ntaggat |
15001476 |
T |
|
| Q |
268 |
tattgttatttatttcagattaatgtggtgctactgagtgttgcagttaccttatatttaggagtagcttgattatagttttgattaatggctggaatcc |
367 |
Q |
| |
|
||||| || | || ||||| ||| | || || ||| |||||||||||||||||||||||| ||||||||||| ||| | ||| |||| ||||||||| |
|
|
| T |
15001477 |
tattgaaatattattgagatt-atgggttgttaatgattgttgcagttaccttatatttaggtgtagcttgattgtaggtgtgactaattgctggaatct |
15001575 |
T |
|
| Q |
368 |
ctaaggcttgtagatatgtaaca |
390 |
Q |
| |
|
||| |||| |||||| ||||||| |
|
|
| T |
15001576 |
ctacggctcgtagatgtgtaaca |
15001598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 489
Target Start/End: Original strand, 15001648 - 15001720
Alignment:
| Q |
416 |
tatatatatagtggtcctgatgaatgaacagggacacacaaattcaaagaattatattgtggtgaaatttaaca |
489 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||| ||||||||||||| | ||||||||||| |||||| |
|
|
| T |
15001648 |
tatatatatagtggtcctgatgaatgcatagagacacac-aattcaaagaattcttttgtggtgaaacttaaca |
15001720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 15513401 - 15513352
Alignment:
| Q |
202 |
agttcctccttcgcaagttaggcattcgagatcttcatgctccaacttga |
251 |
Q |
| |
|
|||| |||| || |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
15513401 |
agtttctccgtcacaagttgggcattcgaaatcttcatgctccaacttga |
15513352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 15001249 - 15001285
Alignment:
| Q |
7 |
gattatactgtgatagtaaatcagcgttgcatatagc |
43 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
15001249 |
gattatattgtgatagtaaatcagcgtttcatatagc |
15001285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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