View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_high_19 (Length: 277)

Name: NF19085_high_19

Description: NF19085

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19085_high_19

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 170; E-Value: 3e-91

Query Start/End: Original strand, 18 - 257

Target Start/End: Complemental strand, 34725147 - 34724904

Alignment:

Q	18	agttttatatgctattaggttttaaatgctttttcacaatggtggagcttattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34725147	agttttatatgctattaggttttaaatactttttcacaattttggagattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagt	34725048	T

Q	118	tctaaatttgaacnnnnnnnnnnn----gaggtaaaatttgaattagagccgtttggattttattttcattttatgatacaagtttgaattacaaaaata	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34725047	tctaaatttgaacatttattttttttttgaggtaaaatttgaattagagccgtttggattttattttcattttatgatacaagtttgaattacaaaaata	34724948	T

Q	214	tcatttccgtttataagtgtttgtacccgtatataatggattta	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34724947	tcatttccgtttccaagtgtttgtacccgtatataatggattta	34724904	T

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Target: chr8; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 62 - 130

Target Start/End: Complemental strand, 34729225 - 34729157

Alignment:

Q	62	gagcttattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaac	130	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	34729225	gagcttaatctgatcatactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaac	34729157	T

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