View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_high_30 (Length: 248)

Name: NF19085_high_30

Description: NF19085

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19085_high_30

[»] chr4 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 92 - 232

Target Start/End: Complemental strand, 53214118 - 53213978

Alignment:

Q	92	tgctcaatgtcctaatgaatggtagttgcttttccatgtgttttgaggaagcgggaagagtggtttttctaaagacgcaacttctgattatgttacacca	191	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53214118	tgctcaatgtcctaatgaatggtagttgcttttccatgtgttttgaggaagcgggaagagtggtttttctaaagacacaacttctgattatgttacacca	53214019	T

Q	192	tcatcctcccaacgacaaggttttcaaacaggtttacataa	232	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53214018	tcatcctccctacgacaaggttttcaaacaggtttacataa	53213978	T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 59; E-Value: 4e-25

Query Start/End: Original strand, 87 - 232

Target Start/End: Original strand, 45476656 - 45476801

Alignment:

Q	87	tttattgctcaatgtcctaatgaatggtagttgcttttccatgtgttttgaggaagcgggaagagtggtttttctaaagacgcaacttctgattatgtta	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|
T	45476656	tttattgctcaatattccagtgaatggtagttgcttttccatgtattttgaggaaccgcgtcgagtagtttttctaaagacacaacttctgatggtatta	45476755	T

Q	187	caccatcatcctccc-aacgacaaggttttcaaacaggtttacataa	232	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45476756	caccatcctcctccctgaaga-aaagttttcaaacaggtttacataa	45476801	T

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