View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19085_high_31 (Length: 240)
Name: NF19085_high_31
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 10234226 - 10234093
Alignment:
| Q |
88 |
tgtttaaagtttctgatcataagtacaagttaatatggactggtggaacaactgttgttgatgtcaacctcaatgacatccctaatacgcacatcaagta |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10234226 |
tgtttaaagtttctgatcataagtacaagttaatatggactggtggaacaactgctgttgatgtcaacctcaatgacatctctaatacgcacatcaagta |
10234127 |
T |
|
| Q |
188 |
taaaccttttgctgaaatagtttccggcaaatgg |
221 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10234126 |
taagccttttgctgaaatagtttccagcaaatgg |
10234093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 10234310 - 10234277
Alignment:
| Q |
30 |
catacaaatctgtttatgacaaaacacttgaagt |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10234310 |
catacaaatctgtttatgacaaaacacttgaagt |
10234277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10234297 - 10234265
Alignment:
| Q |
1 |
ttatgacaaaacacttgaagttaattctacata |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10234297 |
ttatgacaaaacacttgaagttaattctacata |
10234265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 10234328 - 10234295
Alignment:
| Q |
60 |
aagtactcattccaactacatacaaatctgttta |
93 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
10234328 |
aagtactcattccaactgcatacaaatctgttta |
10234295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 8337110 - 8336977
Alignment:
| Q |
88 |
tgtttaaagtttctgatcataagtacaagttaatatggactggtggaacaactgttgttgatgtcaacctcaatgacatccctaatacgcacatcaagta |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8337110 |
tgtttaaagtttctgatcataagtacaagttaatatggactggtggaacaactgctgttgatgtcaacctcaatgacatccctaatacgcacatcaagta |
8337011 |
T |
|
| Q |
188 |
taaaccttttgctgaaatagtttccggcaaatgg |
221 |
Q |
| |
|
||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
8337010 |
taagccttttgctgaaatagttttcggaaaatgg |
8336977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 8337194 - 8337161
Alignment:
| Q |
30 |
catacaaatctgtttatgacaaaacacttgaagt |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8337194 |
catacaaatctgtttatgacaaaacacttgaagt |
8337161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8337181 - 8337149
Alignment:
| Q |
1 |
ttatgacaaaacacttgaagttaattctacata |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8337181 |
ttatgacaaaacacttgaagttaattctacata |
8337149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University