View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_high_32 (Length: 233)

Name: NF19085_high_32
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_high_32
NF19085_high_32
[»] chr3 (13 HSPs)
chr3 (13-231)||(48348169-48348384)
chr3 (13-76)||(44585854-44585918)
chr3 (96-146)||(17773169-17773219)
chr3 (96-146)||(19074470-19074520)
chr3 (26-76)||(44436455-44436505)
chr3 (27-76)||(28944164-28944213)
chr3 (23-75)||(8024842-8024894)
chr3 (13-64)||(25902480-25902532)
chr3 (97-145)||(33329611-33329659)
chr3 (24-76)||(46226885-46226937)
chr3 (27-75)||(51315562-51315610)
chr3 (13-60)||(53184701-53184749)
chr3 (13-72)||(54719061-54719121)
[»] chr4 (7 HSPs)
chr4 (29-146)||(23759560-23759674)
chr4 (21-76)||(16292460-16292515)
chr4 (13-75)||(53924814-53924876)
chr4 (13-76)||(2654021-2654085)
chr4 (13-76)||(10059750-10059814)
chr4 (98-142)||(21322710-21322754)
chr4 (13-56)||(42526051-42526095)
[»] chr1 (7 HSPs)
chr1 (97-147)||(25085397-25085447)
chr1 (29-76)||(14979001-14979048)
chr1 (96-146)||(39642199-39642249)
chr1 (13-75)||(1096631-1096695)
chr1 (35-76)||(16545766-16545807)
chr1 (13-76)||(3377695-3377759)
chr1 (13-76)||(23891726-23891790)
[»] chr6 (3 HSPs)
chr6 (13-76)||(33401238-33401302)
chr6 (13-75)||(2840857-2840920)
chr6 (97-146)||(30349348-30349397)
[»] chr5 (11 HSPs)
chr5 (13-76)||(28446188-28446251)
chr5 (13-76)||(6130321-6130385)
chr5 (96-144)||(39574240-39574288)
chr5 (13-75)||(40276086-40276149)
chr5 (23-73)||(36798370-36798420)
chr5 (97-142)||(3333695-3333740)
chr5 (26-75)||(30603680-30603729)
chr5 (97-145)||(586678-586726)
chr5 (13-76)||(3333758-3333822)
chr5 (13-64)||(19340839-19340891)
chr5 (13-64)||(32391797-32391849)
[»] chr2 (10 HSPs)
chr2 (96-142)||(6510264-6510310)
chr2 (23-76)||(34679287-34679340)
chr2 (13-76)||(6592918-6592981)
chr2 (96-147)||(14489475-14489526)
chr2 (26-76)||(6510197-6510247)
chr2 (30-76)||(35718857-35718903)
chr2 (96-145)||(16043290-16043339)
chr2 (13-76)||(15023022-15023086)
chr2 (13-76)||(39918625-39918689)
chr2 (90-146)||(44617996-44618052)
[»] chr8 (3 HSPs)
chr8 (13-75)||(45177391-45177454)
chr8 (95-147)||(23702121-23702173)
chr8 (13-76)||(30539055-30539119)
[»] scaffold0137 (1 HSPs)
scaffold0137 (30-76)||(20121-20167)
[»] chr7 (4 HSPs)
chr7 (13-73)||(35250303-35250364)
chr7 (13-76)||(4049905-4049969)
chr7 (13-76)||(5172707-5172771)
chr7 (32-76)||(36580340-36580384)
[»] scaffold0809 (1 HSPs)
scaffold0809 (13-76)||(2819-2883)
[»] scaffold0250 (1 HSPs)
scaffold0250 (96-144)||(3573-3621)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 48348384 - 48348169
Alignment:
Q  13 accaaaaattgctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtagnnnnnnnnnnnnnaaggaaccaaaatcgcaacttta 112  Q
    |||||||||||  ||||  ||||||||||||||||||||||||| ||||||||| ||||| |||             ||  |||||||||||||||||      
T  48348384 accaaaaattggcttggaaggccaaaactactgcagttgcaaaacttaggggaccgttttatagtttttttttt---aaaaaaccaaaatcgcaacttcg 48348288  T
Q  113 tgaaagtcagagggcgaaaactgctgttaagcctacttaaaacatatattaatgtcacctaacatattatcatgaataaggtaccgttccataaaagtta 212  Q
    | ||||| || |||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48348287 taaaagttagggggcgaaaactgctattaagtctaattaaaacacatattaatgtcacctaacatattatcatgaataaggtaccgttccataaaagtta 48348188  T
Q  213 ataattaaaattgagtata 231  Q
    |||||||||||||||||||    
T  48348187 ataattaaaattgagtata 48348169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 44585918 - 44585854
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | ||||||||| |||||| || ||||||||||||||||||| | |||||||||    
T  44585918 accaaaaattggtcttggggggcgaaaactgctacagttgcaaaatttagggggcggttttgtag 44585854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 17773219 - 17773169
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcct 146  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||||    
T  17773219 ccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcct 17773169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 19074520 - 19074470
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcct 146  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||||    
T  19074520 ccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcct 19074470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 44436505 - 44436455
Alignment:
Q  26 ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||||||||| || ||||||||||| ||||||| | |||||||||    
T  44436505 ttggggggccaaaactgctacagttgcaaaacttagggggcggttttgtag 44436455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 28944164 - 28944213
Alignment:
Q  27 tggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||||||| ||| |||||||||| ||| ||||| |||||||||    
T  28944164 tggggggccaaaactgctgaagttgcaaaacttaagggacggttttgtag 28944213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 8024894 - 8024842
Alignment:
Q  23 gctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||||||||||| || |||||||||||  |||||| | ||||||||    
T  8024894 gctttggggggccaaaactgctacagttgcaaaacgtagggggcggttttgta 8024842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 25902532 - 25902480
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttagggg 64  Q
    ||||||||||| | ||||||||||||||||  | |||||||||||||||||||    
T  25902532 accaaaaattggtcttggggggccaaaactgttacagttgcaaaatttagggg 25902480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 33329659 - 33329611
Alignment:
Q  97 caaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcc 145  Q
    ||||||||||||||  | ||||| ||||||||||||||||| |||||||    
T  33329659 caaaatcgcaacttcgtaaaagttagagggcgaaaactgctattaagcc 33329611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 46226885 - 46226937
Alignment:
Q  24 ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| |||||| || ||||||||||| ||| ||||| |||||||||    
T  46226885 ctttggggggctaaaactgctacagttgcaaaagttatgggacggttttgtag 46226937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 51315610 - 51315562
Alignment:
Q  27 tggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||||||| || ||||||||||| ||||||| | ||||||||    
T  51315610 tggggggccaaaactgctacagttgcaaaacttagggggcggttttgta 51315562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 53184701 - 53184749
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaattta 60  Q
    ||||||||||| |||||||||||||||||| || |||||||||| ||||    
T  53184701 accaaaaattggctttggggggccaaaactgcttcagttgcaaatttta 53184749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 54719121 - 54719061
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgtttt 72  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| |||| |||| |||||    
T  54719121 accaaaaattgaccttggggggccaaaactgctacagttgcaaaacttagaggacggtttt 54719061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 23759674 - 23759560
Alignment:
Q  29 gggggccaaaactactgcagttgcaaaatttaggggactgttttgtagnnnnnnnnnnnnnaaggaaccaaaatcgcaactttatgaaagtcagagggcg 128  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||             ||||  |||||||||||||||||||||||| || |||||    
T  23759674 gggggccaaaactactacagttgcaaaatttaggggacggttttgtag---tttttttcttaaggggccaaaatcgcaactttatgaaagttagggggcg 23759578  T
Q  129 aaaactgctgttaagcct 146  Q
    |||||| || ||||||||    
T  23759577 aaaactactattaagcct 23759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 16292460 - 16292515
Alignment:
Q  21 ttgctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||    
T  16292460 ttgctttggggggccaaaactactacagttgcaaaacttaggggacgattttgtag 16292515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 53924876 - 53924814
Alignment:
Q  13 accaaaaattgctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||| | | ||||||||||||| || ||||||||||| ||||||||| ||||||||    
T  53924876 accaaaaattgatcttgggggccaaaactgctacagttgcaaaacttaggggacggttttgta 53924814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 2654085 - 2654021
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| |||||||||||||||||| || ||||||||||| ||||| ||  |||||||||    
T  2654085 accaaaaattggctttggggggccaaaactgctacagttgcaaaacttaggagatggttttgtag 2654021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 10059814 - 10059750
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | ||||||| |||||||| || ||||||||||| ||||||| | |||||||||    
T  10059814 accaaaaattgaccttgggggaccaaaactgctacagttgcaaaacttagggggcggttttgtag 10059750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 21322754 - 21322710
Alignment:
Q  98 aaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaa 142  Q
    ||||||||||||| |||||||| |||||||||||| |||| ||||    
T  21322754 aaaatcgcaacttcatgaaagttagagggcgaaaattgctattaa 21322710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 42526095 - 42526051
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaa 56  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||    
T  42526095 accaaaaattgacattggggggccaaaactactacagttgcaaaa 42526051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 25085447 - 25085397
Alignment:
Q  97 caaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagccta 147  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  25085447 caaaatcgcaactttatgaaagttagggggcgaaaactgctattaagccta 25085397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 14979001 - 14979048
Alignment:
Q  29 gggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||| ||||||||||| ||||||||||||||||||| | |||||||||    
T  14979001 ggggtccaaaactactacagttgcaaaatttagggggcggttttgtag 14979048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 39642249 - 39642199
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcct 146  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||||    
T  39642249 ccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcct 39642199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 1096631 - 1096695
Alignment:
Q  13 accaaaaattg--ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    |||||||||||  ||| |||||||||||||| || ||||||||||  ||||||||| ||||||||    
T  1096631 accaaaaattggccttcggggggccaaaactgctacagttgcaaagcttaggggacggttttgta 1096695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 16545766 - 16545807
Alignment:
Q  35 caaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||| || ||||||||||||||||||||| |||||||||    
T  16545766 caaaactgctacagttgcaaaatttaggggacggttttgtag 16545807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 3377695 - 3377759
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||| ||||||||||| ||  |||||||||| ||||||||| |||||||||    
T  3377695 accaaaaattggccttggagggccaaaactgctaaagttgcaaaacttaggggacggttttgtag 3377759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 23891790 - 23891726
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| ||| ||| | |||||||||    
T  23891790 accaaaaattgatcttggggggccaaaactgctacagttgcaaaacttaaggggcggttttgtag 23891726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 33401238 - 33401302
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| ||||||||| |||||||||    
T  33401238 accaaaaattggtcttggggggccaaaactgctacagttgcaaaacttaggggacagttttgtag 33401302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 2840920 - 2840857
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||| | |||||||||||||||| || || |||||||| ||||||||| ||||||||    
T  2840920 accaaaaattgacattggggggccaaaactgctacaattgcaaaacttaggggacggttttgta 2840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 30349397 - 30349348
Alignment:
Q  97 caaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcct 146  Q
    |||||||||||||||  |||||| ||||||| ||||||||| ||||||||    
T  30349397 caaaatcgcaactttgggaaagttagagggctaaaactgctattaagcct 30349348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 28446188 - 28446251
Alignment:
Q  13 accaaaaattgctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | | ||||||||||||| || ||||||||||| ||||||||| |||||||||    
T  28446188 accaaaaattgatcttgggggccaaaactgctacagttgcaaaacttaggggacggttttgtag 28446251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 6130385 - 6130321
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| ||||||||  |||||||||    
T  6130385 accaaaaattggccttggggggccaaaactgctacagttgcaaaacttaggggatggttttgtag 6130321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 39574288 - 39574240
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagc 144  Q
    |||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  39574288 ccaaaatcgcaacttcgtgaaagttagagggcgaaaactgctattaagc 39574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 40276149 - 40276086
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| |||||||||  |||||||    
T  40276149 accaaaaattggccttggggggccaaaactgctacagttgcaaaacttaggggacgattttgta 40276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 36798370 - 36798420
Alignment:
Q  23 gctttggggggccaaaactactgcagttgcaaaatttaggggactgttttg 73  Q
    ||||||||||||||||||| || ||||||||||| ||||||| | ||||||    
T  36798370 gctttggggggccaaaactgctacagttgcaaaacttagggggcggttttg 36798420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 3333740 - 3333695
Alignment:
Q  97 caaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaa 142  Q
    |||||||||||||| |||||||| || |||||||||||||| ||||    
T  3333740 caaaatcgcaacttcatgaaagttagggggcgaaaactgctattaa 3333695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 30603729 - 30603680
Alignment:
Q  26 ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    |||||||||||||||| || ||||||||||| ||||||| | ||||||||    
T  30603729 ttggggggccaaaactgctacagttgcaaaacttagggggcagttttgta 30603680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 586678 - 586726
Alignment:
Q  97 caaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcc 145  Q
    |||||||||||||| |||||||| ||||| |||||| |||| |||||||    
T  586678 caaaatcgcaacttcatgaaagttagaggacgaaaattgctattaagcc 586726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 3333822 - 3333758
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || || |||||||| |||| |||| |||||||||    
T  3333822 accaaaaattggccttggggggccaaaactgctacatttgcaaaacttagaggacggttttgtag 3333758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 19340891 - 19340839
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttagggg 64  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| |||||||    
T  19340891 accaaaaattgatcttggggggccaaaactgctacagttgcaaaacttagggg 19340839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 32391849 - 32391797
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttagggg 64  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| |||||||    
T  32391849 accaaaaattggccttggggggccaaaactgctacagttgcaaaacttagggg 32391797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 6510264 - 6510310
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaa 142  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||    
T  6510264 ccaaaatcgcaacttcatgaaagttagagggcgaaaactgctattaa 6510310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34679287 - 34679340
Alignment:
Q  23 gctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||||||||||| || ||||||||||| ||||||| | |||||||||    
T  34679287 gctttggggggccaaaactgctacagttgcaaaacttagggggcggttttgtag 34679340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 6592918 - 6592981
Alignment:
Q  13 accaaaaattgctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||||  || ||||||||||||| || ||||||||||| ||||||| | |||||||||    
T  6592918 accaaaaattggctttgggggccaaaactgctacagttgcaaaacttagggggcagttttgtag 6592981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 14489475 - 14489526
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagccta 147  Q
    |||||||||||||||  ||||||| || |||||||||||||| |||||||||    
T  14489475 ccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagccta 14489526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 6510197 - 6510247
Alignment:
Q  26 ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||||||||| || ||||||||||| ||||||| | |||||||||    
T  6510197 ttggggggccaaaactgctacagttgcaaaacttagggggcggttttgtag 6510247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 35718857 - 35718903
Alignment:
Q  30 ggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||||| || ||||||||||| ||||||||| |||||||||    
T  35718857 ggggccaaaactgctacagttgcaaaacttaggggacggttttgtag 35718903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 16043290 - 16043339
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcc 145  Q
    ||||||||| |||||  ||||||| || ||||||||||||||||||||||    
T  16043290 ccaaaatcgtaacttcgtgaaagttagggggcgaaaactgctgttaagcc 16043339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 15023022 - 15023086
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||| | || ||||| ||||| ||||||||| |||||||||    
T  15023022 accaaaaattggtcttggggggccaaaattgctacagttacaaaacttaggggacggttttgtag 15023086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 39918625 - 39918689
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||| | || ||||||||||| ||||||| | |||||||||    
T  39918625 accaaaaattggccttggggggccaaaattgctacagttgcaaaacttagggggcggttttgtag 39918689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 44617996 - 44618052
Alignment:
Q  90 aaggaaccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagcct 146  Q
    |||| ||||||||||||||||  ||||||| ||||||  ||||||||| ||||||||    
T  44617996 aagggaccaaaatcgcaacttcttgaaagttagagggttaaaactgctattaagcct 44618052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 45177391 - 45177454
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgta 75  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||| ||| ||| | ||||||||    
T  45177391 accaaaaattggctttgggaggccaaaactactacagttgcaaaacttatggggcagttttgta 45177454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 23702173 - 23702121
Alignment:
Q  95 accaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagccta 147  Q
    |||||||||| |||||| ||||||| |  |||||||||||||| |||||||||    
T  23702173 accaaaatcgtaactttgtgaaagttaaggggcgaaaactgctattaagccta 23702121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 30539119 - 30539055
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || |||||| |||| ||||||| | |||||||||    
T  30539119 accaaaaattggccttggggggccaaaactgctacagttgtaaaacttagggggcagttttgtag 30539055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 20121 - 20167
Alignment:
Q  30 ggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||||    
T  20121 ggggccaaaactactacaattgcaaaatttaggggacgattttgtag 20167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 35250303 - 35250364
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttg 73  Q
    ||||||||||| | |||||||||||||||| || ||||||||||| ||||||| | ||||||    
T  35250303 accaaaaattggtcttggggggccaaaactgctacagttgcaaaacttagggggcagttttg 35250364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 4049905 - 4049969
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||||||||||||| || ||||||||||  ||||||| | |||||||||    
T  4049905 accaaaaattggccttggggggccaaaactgctacagttgcaaaccttagggggcggttttgtag 4049969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 5172707 - 5172771
Alignment:
Q  13 accaaaaattg-ctttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | ||||||| |||||||| || ||||||||||| ||||||| | |||||||||    
T  5172707 accaaaaattggccttgggggaccaaaactgctacagttgcaaaacttagggggcggttttgtag 5172771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 36580384 - 36580340
Alignment:
Q  32 ggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    |||||||||| || ||||||||||| ||||||||| |||||||||    
T  36580384 ggccaaaactgctacagttgcaaaacttaggggacggttttgtag 36580340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 2883 - 2819
Alignment:
Q  13 accaaaaattgct-ttggggggccaaaactactgcagttgcaaaatttaggggactgttttgtag 76  Q
    ||||||||||| | |||||| ||||||||| || |||||| |||||||||||| | |||||||||    
T  2883 accaaaaattggtcttggggagccaaaactgctacagttgtaaaatttagggggcagttttgtag 2819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 3621 - 3573
Alignment:
Q  96 ccaaaatcgcaactttatgaaagtcagagggcgaaaactgctgttaagc 144  Q
    ||||||||| |||||| ||||||| ||| ||||||||||||| ||||||    
T  3621 ccaaaatcgtaactttgtgaaagttagaaggcgaaaactgctattaagc 3573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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