View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_high_6 (Length: 417)
Name: NF19085_high_6
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 44346135 - 44345747
Alignment:
| Q |
14 |
atagagagcaagcagcatccaaattctaatccacaactctaattgaacnnnnnnnnnnn-caatattgagacatatgctagactttgtttattaatttct |
112 |
Q |
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| T |
44346135 |
atagagagcaagcagcatccaaattctaatccacaactctaattgaacaaaaaaaaaaaacaatattcagacatatgctagactttgtttattaatttct |
44346036 |
T |
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| Q |
113 |
tccctcagacacattttttggattggacgatttaaaaagaaacaatatatacacacacccgaaataaaaccactagnnnnnnn-ggtacaaaaagaacta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44346035 |
accctcagacacattttttggattggacgatttaaaaagaaacaatatatacacacacccgaaataaaaccactagttttttttggtacaaaaagaacta |
44345936 |
T |
|
| Q |
212 |
gcagttggtatccataaaaaaccctcagagcttattcagtatcaataagctcctcagagtttattgannnnnnnatgattcaacagaacttatttctata |
311 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
44345935 |
gcagttggtatccataaaaaaccctgagagcttatttagtatcaataagctcctcagagtttattgatttttttatgattcaacagaacttatttcta-a |
44345837 |
T |
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| Q |
312 |
acttaacttatagtaatatatatttcagttacctataaattcaagacccgtagatgcaagtttattgactagagcaagtgcgttacttgt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44345836 |
acttaacttatagtaatatatatttcagttacctataaattcaagacccgtagatgcaagtttattgacaagagcaagtgcgttacttgt |
44345747 |
T |
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