View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_high_8 (Length: 364)

Name: NF19085_high_8
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_high_8
NF19085_high_8
[»] chr2 (1 HSPs)
chr2 (19-311)||(16559752-16560045)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 16559752 - 16560045
Alignment:
Q  19 tatttcatgttcaacttcatatcgacagtagtactattttccttctccaccatcactggtcctctcattcactcggcgcatgcaagaacaccatatttgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16559752 tatttcatgttcaacttcatatcgacagtagtactattttccttctccaccattactggtcctctcattcactcggcgcatgcaagaacaccatatttgc 16559851  T
Q  119 atagcctctttgtcgttacattcgctctgtgactattgtcgcactcaagacatactacgactccaaagccacactccctctccgtcttgtacaccagctg 218  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16559852 atagcctctttgtcgttgcatttgctctgtgactattgtcgcactcaagacatactacgactccaaagccacactccctctccgtcttgtacaccagctg 16559951  T
Q  219 cccaccagaacaacataattgcat-ccctcttcattgtcgtacttactatcacagtctttgcaagcgctagactcacacctcagctgcgaacaa 311  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16559952 cccaccagaacaacataattgcatcccctcttcatcgtcgtacttactatcacagtctttgcaagcgctagactcacgcctcagctgcgaacaa 16560045  T

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