View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_10 (Length: 361)
Name: NF19085_low_10
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 54600764 - 54600415
Alignment:
| Q |
1 |
ggttggaaatctgcggtgtatccttatgtcgtgttttttcaacgagcaatcaaggtcatggccatatttgtattataatgttcttcttcactttccgatg |
100 |
Q |
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| T |
54600764 |
ggttggaaatctgcggtgtatccttatgtcgtgttttttcaatgagcaatcaaggtcatggccatatttgtattataatattcttcttcactttctgatg |
54600665 |
T |
|
| Q |
101 |
tatctatgttgtttctgcatttattatgtcgagtcaaggaaaatggccggtattgaggattgttttcatgggaattgtattccttggaaccaataag-nn |
199 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54600664 |
tatctatgttgtttctgcatttattacgttgagtcaaggaaaatggccggtattgaggattgttttcatgggaattgtattccttggaaccaataagttt |
54600565 |
T |
|
| Q |
200 |
nnnnnnataaccgcatgtccacattatttttcctgaagatcttaatatttcaatatatctgtattcatgctttctgtttttgaaatgtattcatgctgtc |
299 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54600564 |
ttttttataaccgcatgtccacattatttttccggaagatcttaatatttcaatatatctgtattcatgctttctgtttttgaaatgtattcatgctttc |
54600465 |
T |
|
| Q |
300 |
tgtttttgaaacaaggcttaaatcctacaaccaacttcttggcgtatatt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54600464 |
tgtttttgaaacaaggcttaaatcctacaaccaacttcttggcgtatatt |
54600415 |
T |
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