View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_11 (Length: 360)
Name: NF19085_low_11
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 38820187 - 38820539
Alignment:
| Q |
10 |
attattcttctttgataaataaaggaaaggaaaggatgtgtgtgcaaaatatataaagcatattccatattgaattaataatgtacagcaatattttagt |
109 |
Q |
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| T |
38820187 |
attattcttctttgataaataaaggaaaggaaaggatgtgtgtgcaaaatatataaaacatattccatattgaattaataatgtacagcaatattttagt |
38820286 |
T |
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| Q |
110 |
tattcaacaacatcgaccaccaaacaaacaatatacacgacataaattgtgttacaattcaagtgtctgctcaagcaaatatatcacacacacccacaat |
209 |
Q |
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| T |
38820287 |
tattcaacaacatcgaccaccaaacaaacaatatacacgacataaattgtgttacaattcaagtgtctgctcaagcaaatatatcacacccacccacaat |
38820386 |
T |
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| Q |
210 |
aacactcgtggtgtagagtatgataatttttgcaaccgtgtaaattgaaatcgcgtcactataataagtacattattagatataacttaaggc-----ta |
304 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
38820387 |
aacactc---gtgtagagtatgataatttttgcaaccgtgtaaattgaaatcgcgtcactataataagcacattattagatataacttaaggctaggtta |
38820483 |
T |
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| Q |
305 |
ggttgcacatgcattaccattagagatcccctaagaatatcatctagtttgtgcat |
360 |
Q |
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| T |
38820484 |
ggttgcacatgcattaccattagagatcccctaagaatatcatctagtttgtgcat |
38820539 |
T |
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