View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_12 (Length: 347)
Name: NF19085_low_12
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 16406114 - 16405781
Alignment:
| Q |
1 |
gttaacaaaatccttataccctggtaagtcagcccaacatttcaacatcctttgcggtctagggtccccaattctcttcatcaatcatcaaaactatcgg |
100 |
Q |
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| T |
16406114 |
gttaacaaaatccttataccctggtaagtcagcccaacatttcaacatcctttgcggtctagggtccccaattctcttcatcaatcatcaaaactatcgg |
16406015 |
T |
|
| Q |
101 |
acaatggtcagatatatacctctaggaagggccacctgaatgcaattcggccagcgctgacaccaaggttcggataacaaaaatcggtcaagatgactca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16406014 |
acaatggtcagatatatacctctaggaagggccacctgaatgcaattcggccagcgctgacaccaaggttcggataacaaaaatcggtcaagatgactca |
16405915 |
T |
|
| Q |
201 |
tcgacaaaccatccccacgatattaggtgaaccttcgaccacacagcgcaatatcaataagataattcttcgtaatgaaatgtttaaagtgagagtaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16405914 |
tcgacaaaccatccccacgatattaggtgaaccttcgaccacacagcgcaatatcaataagataattcttcgtaatgaaatgtttaaagtgagagtaatc |
16405815 |
T |
|
| Q |
301 |
ttcaaaacggccacccgacactatacttcatctc |
334 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
16405814 |
ttcaaaacggccacccgacactatacttcttctc |
16405781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 14492220 - 14492265
Alignment:
| Q |
3 |
taacaaaatccttataccctggtaagtcagcccaacatttcaacat |
48 |
Q |
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|||||||||||||||| || ||||| |||| ||||||||||||||| |
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| T |
14492220 |
taacaaaatccttataaccaggtaattcagaccaacatttcaacat |
14492265 |
T |
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