View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_13 (Length: 343)

Name: NF19085_low_13
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_13
NF19085_low_13
[»] chr4 (3 HSPs)
chr4 (233-326)||(43738121-43738214)
chr4 (13-95)||(43737897-43737982)
chr4 (284-325)||(47523880-47523921)
[»] scaffold1037 (2 HSPs)
scaffold1037 (208-326)||(2525-2643)
scaffold1037 (13-95)||(2332-2413)
[»] scaffold1031 (2 HSPs)
scaffold1031 (208-326)||(2644-2762)
scaffold1031 (13-95)||(2450-2532)
[»] chr8 (10 HSPs)
chr8 (208-326)||(216701-216819)
chr8 (208-326)||(693261-693379)
chr8 (208-326)||(697470-697588)
chr8 (208-326)||(730324-730442)
chr8 (208-326)||(854219-854337)
chr8 (13-95)||(216932-217014)
chr8 (13-95)||(693492-693574)
chr8 (13-95)||(697701-697783)
chr8 (13-95)||(730555-730637)
chr8 (13-95)||(854450-854532)
[»] chr5 (1 HSPs)
chr5 (237-326)||(4554062-4554152)
[»] chr2 (1 HSPs)
chr2 (284-325)||(36476100-36476141)
[»] chr1 (1 HSPs)
chr1 (237-326)||(17494718-17494807)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 43738121 - 43738214
Alignment:
Q  233 cttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaag 326  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43738121 cttcaaatacagtgaagcttgttgtggtggttttccagatacgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaag 43738214  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 43737897 - 43737982
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaa---gnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    ||||||||||||||||||||||||||||||||||||| ||           |||||||||||||||||||||||||||| ||||||    
T  43737897 aatatagccaagcaacctacacgacataataacaaaataaaataaataaaacattgagatttttcaaatacataaatgtcgatcat 43737982  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 47523880 - 47523921
Alignment:
Q  284 ttgttgttgtgatgttccagatctcaacttttaggaagaaaa 325  Q
    |||||||||||||||| ||||||| || ||||||||||||||    
T  47523880 ttgttgttgtgatgtttcagatctaaaattttaggaagaaaa 47523921  T

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Target: scaffold1037 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 2525 - 2643
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||    
T  2525 ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct 2624  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  2625 caacttttaggaagaaaag 2643  T

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Target: scaffold1037; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2332 - 2413
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  2332 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaat-attgagatttttcaaatacataaatgtagatcat 2413  T

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Target: scaffold1031 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 2644 - 2762
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||    
T  2644 ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct 2743  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  2744 caacttttaggaagaaaag 2762  T

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Target: scaffold1031; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2450 - 2532
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  2450 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 2532  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 216819 - 216701
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  216819 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 216720  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  216719 caacttttaggaagaaaag 216701  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 693379 - 693261
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  693379 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 693280  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  693279 caacttttaggaagaaaag 693261  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 697588 - 697470
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  697588 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 697489  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  697488 caacttttaggaagaaaag 697470  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 730442 - 730324
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  730442 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 730343  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  730342 caacttttaggaagaaaag 730324  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 854337 - 854219
Alignment:
Q  208 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 307  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  854337 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 854238  T
Q  308 caacttttaggaagaaaag 326  Q
    |||||||||||||||||||    
T  854237 caacttttaggaagaaaag 854219  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 217014 - 216932
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  217014 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 216932  T

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Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 693574 - 693492
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  693574 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 693492  T

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Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 697783 - 697701
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  697783 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 697701  T

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Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 730637 - 730555
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  730637 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 730555  T

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Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 854532 - 854450
Alignment:
Q  13 aatatagccaagcaacctacacgacataataacaaaagaagnnnnnnncattgagatttttcaaatacataaatgtagatcat 95  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  854532 aatatagccaagcaacctacacgacataataacaaaagaagaaaaaaacattgagatttttcaaatacataaatgtagatcat 854450  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 4554152 - 4554062
Alignment:
Q  237 aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaag 326  Q
    ||||||| ||||| |||||||||| ||||| || || ||||||| || |||||||| ||||||||||||||| | ||| ||||||||||||    
T  4554152 aaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttcttgttgttttgatgttccagatctgaccttgtaggaagaaaag 4554062  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 36476141 - 36476100
Alignment:
Q  284 ttgttgttgtgatgttccagatctcaacttttaggaagaaaa 325  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  36476141 ttgttgttgtgatgttccagatctaaaattttaggaagaaaa 36476100  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 17494807 - 17494718
Alignment:
Q  237 aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaag 326  Q
    ||||||| |||||||||||||| |||||||||| || | ||| |||| ||||| | ||||| | ||| ||||||||| |||||||||||||    
T  17494807 aaatacaatgaagcttgttgtgatggttttccaaatccaaatctattcttgttttggtgat-taccaaatctcaactgttaggaagaaaag 17494718  T

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