View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_17 (Length: 310)
Name: NF19085_low_17
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 38967124 - 38967340
Alignment:
| Q |
50 |
aaatgaagattcttatcaaacaaagaaaaccatagcagcaccaatgcatgcatccaaaacaagacatcctccaattccaagcttataatgcatagtcata |
149 |
Q |
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| T |
38967124 |
aaatgaggattcttatcaaacaaagaaaaccatagcagcaccaatgcatgcatccaaaacaagacatcc---aattcgaagcttataatgcatagtcata |
38967220 |
T |
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| Q |
150 |
gcagcaccaacacccacctagcatagagtaatcagagacccgatcacaacaaaacgagaggaatgtatactttcacttatagtcaagacttacggtggtg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38967221 |
gcagcaccaacacccacctagcatagagtaatcagagacccgatcacaacaaaacgagaggaatgtatactttcacttatagtcaagacttac---ggtg |
38967317 |
T |
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| Q |
250 |
gaaagacaaccacccctagctac |
272 |
Q |
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||||||||||||||||||||||| |
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| T |
38967318 |
gaaagacaaccacccctagctac |
38967340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 38967071 - 38967112
Alignment:
| Q |
16 |
caattcacatttcctacacaacacaacaattaataaatgaag |
57 |
Q |
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| T |
38967071 |
caattcacatttcctacacaacacaacaattaataaatgaag |
38967112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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