View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_18 (Length: 305)

Name: NF19085_low_18
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_18
NF19085_low_18
[»] chr7 (1 HSPs)
chr7 (16-289)||(43305247-43305518)
[»] chr4 (6 HSPs)
chr4 (16-289)||(44721469-44721740)
chr4 (89-292)||(10820923-10821128)
chr4 (116-209)||(34723292-34723385)
chr4 (72-159)||(19614688-19614775)
chr4 (16-46)||(10820897-10820927)
chr4 (16-44)||(10820629-10820657)
[»] chr5 (2 HSPs)
chr5 (16-289)||(9162674-9162948)
chr5 (116-209)||(30672020-30672113)
[»] chr6 (2 HSPs)
chr6 (19-209)||(12866572-12866747)
chr6 (72-203)||(10824941-10825072)
[»] chr8 (2 HSPs)
chr8 (72-219)||(11661702-11661849)
chr8 (120-209)||(24947145-24947234)
[»] chr1 (3 HSPs)
chr1 (120-209)||(25345095-25345184)
chr1 (85-209)||(22061460-22061584)
chr1 (43-99)||(25345190-25345246)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 43305518 - 43305247
Alignment:
Q  16 tgtttatcattggaaccttcaccttcgttcacatcatttttcccctccaaactcggtggcagtgttgatagtagttcaagttcaacagtagagttcacaa 115  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||  |||||||||||       
T  43305518 tgtttatcattggaaccttcacctttgtccacatcatttttcccctccatactcggtggcagtggtgctagtagttcaagttcagtagtagagttcatgg 43305419  T
Q  116 attcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaactagat 215  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  43305418 attcaacattcccagctattctactctcgttagtttgaatgtttacagcctgcaaaatattcatatacaactcaataaataattctatgacaaacgagat 43305319  T
Q  216 tccacacgtacattcttatatgacgnnnnnnngcaatcaacaattgtcattaccaaacaacatttttatatgaa 289  Q
    | || || ||||||||||||||| |         ||||||||||| |||||||||||||||||||||| |||||    
T  43305318 ttcaaacttacattcttatatgaagaaaaaaa--aatcaacaattctcattaccaaacaacatttttacatgaa 43305247  T

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Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 44721469 - 44721740
Alignment:
Q  16 tgtttatcattggaaccttcaccttcgttcacatcatttttcccctccaaactcggtggcagtgttgatagtagttcaagttcaacagtagagttcacaa 115  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||  |||||||||||       
T  44721469 tgtttatcattggaaccttcacctttgtccacatcatttttcccctccatactcggtggcagtggtgctagtagttcaagttcagtagtagagttcatgg 44721568  T
Q  116 attcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaactagat 215  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  44721569 attcaacattcccagctattctactctcgttagtttgaatgtttacagcctgcaaaatattcatatacaactcaataaataattctatgacaaacgagat 44721668  T
Q  216 tccacacgtacattcttatatgacgnnnnnnngcaatcaacaattgtcattaccaaacaacatttttatatgaa 289  Q
    | || || ||||||||||||||| |         ||||||||||| |||||||||||||||||||||| |||||    
T  44721669 ttcaaacttacattcttatatgaagaaaaaaa--aatcaacaattctcattaccaaacaacatttttacatgaa 44721740  T

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Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 10820923 - 10821128
Alignment:
Q  89 gttcaagttcaacagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactc 188  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10820923 gttcaggttcagcagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgtttacagcctgctaaatattcatatacaactc 10821022  T
Q  189 aacaaataattctatgacaaactagattccacacgtacattcttatatgacg--nnnnnnngcaatcaacaattgtcattaccaaacaacatttttatat 286  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  10821023 aacaaataattctatgacaaactagattccaaacatacattcttatatgacgaaaaaaaaaacaatcaacaattgtcattaccaaacaacatttttatat 10821122  T
Q  287 gaagaa 292  Q
    ||||||    
T  10821123 gaagaa 10821128  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 34723385 - 34723292
Alignment:
Q  116 attcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaa 209  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |||| | | ||||||||||||||| |||||    
T  34723385 attcaacattcccagctattctactcttattagtttgagtgttttcagcctgcaaagtatacacatacgaattaacaaataattctataacaaa 34723292  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 19614775 - 19614688
Alignment:
Q  72 tggcagtgttgatagtagttcaagttcaacagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgttt 159  Q
    ||||| |||||  ||||||||| ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||    
T  19614775 tggcaatgttgcaagtagttcaggttcagcagtagagttcatggattcaacattcccagctattctactctcattagtttgaatgttt 19614688  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 10820897 - 10820927
Alignment:
Q  16 tgtttatcattggaaccttcaccttcgttca 46  Q
    |||||||||||||||||||||||||||||||    
T  10820897 tgtttatcattggaaccttcaccttcgttca 10820927  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 10820657 - 10820629
Alignment:
Q  16 tgtttatcattggaaccttcaccttcgtt 44  Q
    |||||||||||||||||||||||||||||    
T  10820657 tgtttatcattggaaccttcaccttcgtt 10820629  T

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Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 9162948 - 9162674
Alignment:
Q  16 tgtttatcattggaaccttcaccttcgttcacatcatttttcccctccaaactcggtggcagtgttgatagtagttcaagttcaacagtagagttcacaa 115  Q
    |||||||||||||||||||||||||  ||||||| |||||||| ||||| |||||||||||||| || |||||||||||||||| ||||||||||||       
T  9162948 tgtttatcattggaaccttcacctttattcacataatttttcctctccatactcggtggcagtggtgctagtagttcaagttcagcagtagagttcatgg 9162849  T
Q  116 attcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaactagat 215  Q
    |||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9162848 attcaacattcccagctattctactctcgttagtttgaaagtttatagcctgcaaaatattcatatacaactcaataaataattctatgacaaacaagat 9162749  T
Q  216 tccacacgtacattcttatatgacg-nnnnnnngcaatcaacaattgtcattaccaaacaacatttttatatgaa 289  Q
    |||| || ||||||||||||||| |         ||||||||||||||||||||||||||||||||||| |||||    
T  9162748 tccaaacttacattcttatatgaagaaaaaaaaacaatcaacaattgtcattaccaaacaacatttttacatgaa 9162674  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 30672113 - 30672020
Alignment:
Q  116 attcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaa 209  Q
    ||||||||||  ||||||||||||||| |||||||||||||||| ||||||||||| ||| || |||| | | ||||||||||||||| |||||    
T  30672113 attcaacattttcagctattctactcttattagtttgagtgttttcagcctgcaaagtatacacatacgaattaacaaataattctataacaaa 30672020  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 12866572 - 12866747
Alignment:
Q  19 ttatcattggaaccttcaccttcgttcacatcatttttcccctccaaactcggtggcagtgttgatagtagttcaagttcaacagtagagttcacaaatt 118  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||| || ||||||||  ||||||||| ||||| |||||                 
T  12866572 ttatcattggaaccttcaccaacgttcacatcatttttcccctccatactcgatgacagtgttgcaagtagttcaggttcagcagta------------- 12866658  T
Q  119 caacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaa 209  Q
      ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  12866659 --acattcccagctattctactctcattagtttgaatattttcagcctgcaaaatatccatatacgactcaacaaataattctataacaaa 12866747  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 10824941 - 10825072
Alignment:
Q  72 tggcagtgttgatagtagttcaagttcaacagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaa 171  Q
    ||||||||||   ||||||| | |||||||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  10824941 tggcagtgtttcaagtagtttaggttcaacagtagagtttatggattcaacattcccagctattctactctcattagtttgaatgttttcagtctgcaaa 10825040  T
Q  172 atattcatatacaactcaacaaataattctat 203  Q
     | | || |||| | | |||||||||||||||    
T  10825041 gtgtacacatacgaattaacaaataattctat 10825072  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 11661702 - 11661849
Alignment:
Q  72 tggcagtgttgatagtagttcaagttcaacagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaa 171  Q
    ||||| |||||  ||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  11661702 tggcaatgttgcaagtagttcaagttcagcagtagagttcatggattcaacattcccagctattctactctcattagtttgaatgttttcagcctgcaaa 11661801  T
Q  172 atattcatatacaactcaacaaataattctatgacaaactagattcca 219  Q
     ||| || |||| | | ||||||||||||||| |||||  ||||||||    
T  11661802 gtatacacatacgaattaacaaataattctataacaaagaagattcca 11661849  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 24947234 - 24947145
Alignment:
Q  120 aacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaa 209  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||| ||||||| ||||||||||||||| |||||||||    
T  24947234 aacattcccagctattctactctctttagtttgaatgttttcagcttgcaaaatatccatatacgactcaacaaataattatatgacaaa 24947145  T

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Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 25345184 - 25345095
Alignment:
Q  120 aacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatatacaactcaacaaataattctatgacaaa 209  Q
    |||||||||| | |||||||||||||||| |||| ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  25345184 aacattcccaaccattctactctcattagattgaatgttttcagcctgcaaaatatccatatacgactcaacaaataattctatgacaaa 25345095  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 22061584 - 22061460
Alignment:
Q  85 agtagttcaagttcaacagtagagttcacaaattcaacattcccagctattctactctcattagtttgagtgtttacagcctgcaaaatattcatataca 184  Q
    ||||||||| ||||| ||||||||||||   ||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||| || ||||     
T  22061584 agtagttcaggttcagcagtagagttcatggattcaacattcccagctattctaatctcattagtttgaatgttttcagtctgcaaagtatacacatacg 22061485  T
Q  185 actcaacaaataattctatgacaaa 209  Q
    | | ||||||||||||||| |||||    
T  22061484 aattaacaaataattctataacaaa 22061460  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 25345246 - 25345190
Alignment:
Q  43 ttcacatcatttttcccctccaaactcggtggcagtgttgatagtagttcaagttca 99  Q
    ||||||||||||||||| |||| ||||| |||||||||||  ||||||||| |||||    
T  25345246 ttcacatcatttttcccatccatactcgatggcagtgttgcaagtagttcaggttca 25345190  T

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