View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_2 (Length: 511)

Name: NF19085_low_2
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_2
NF19085_low_2
[»] chr5 (10 HSPs)
chr5 (86-502)||(30071704-30072116)
chr5 (144-307)||(3040218-3040379)
chr5 (145-304)||(30735282-30735439)
chr5 (144-308)||(40519168-40519329)
chr5 (134-308)||(30700827-30700999)
chr5 (144-304)||(25493808-25493966)
chr5 (147-200)||(24402035-24402088)
chr5 (148-308)||(20359904-20360064)
chr5 (175-307)||(34280064-34280194)
chr5 (266-307)||(24402154-24402195)
[»] chr1 (14 HSPs)
chr1 (144-307)||(35413015-35413176)
chr1 (148-307)||(29657357-29657514)
chr1 (144-307)||(10061581-10061738)
chr1 (144-304)||(35149625-35149783)
chr1 (147-275)||(43537135-43537261)
chr1 (144-291)||(26469933-26470078)
chr1 (115-270)||(21540036-21540187)
chr1 (148-266)||(23906605-23906721)
chr1 (147-232)||(11470016-11470101)
chr1 (144-210)||(49313596-49313662)
chr1 (245-304)||(49401988-49402047)
chr1 (246-307)||(44958465-44958524)
chr1 (245-307)||(48852731-48852793)
chr1 (259-308)||(34475808-34475857)
[»] chr2 (19 HSPs)
chr2 (144-307)||(20142957-20143118)
chr2 (144-302)||(13716673-13716829)
chr2 (124-310)||(19945679-19945861)
chr2 (160-307)||(14131161-14131306)
chr2 (160-301)||(27007174-27007313)
chr2 (144-272)||(37714412-37714538)
chr2 (125-307)||(3167868-3168045)
chr2 (144-275)||(38320190-38320319)
chr2 (148-307)||(32975978-32976137)
chr2 (124-239)||(35457368-35457484)
chr2 (144-219)||(37899547-37899622)
chr2 (144-308)||(27407411-27407572)
chr2 (144-288)||(31645074-31645217)
chr2 (148-300)||(4434290-4434443)
chr2 (224-307)||(31264827-31264908)
chr2 (245-309)||(37899469-37899533)
chr2 (144-231)||(24183960-24184047)
chr2 (281-315)||(24184084-24184118)
chr2 (194-287)||(31845453-31845544)
[»] chr6 (8 HSPs)
chr6 (144-306)||(32871711-32871872)
chr6 (144-309)||(6784658-6784821)
chr6 (144-307)||(34713490-34713651)
chr6 (144-305)||(2130452-2130611)
chr6 (148-289)||(28867178-28867317)
chr6 (191-309)||(3855692-3855807)
chr6 (148-200)||(6519233-6519285)
chr6 (147-199)||(11301828-11301880)
[»] chr8 (9 HSPs)
chr8 (144-311)||(38585042-38585207)
chr8 (134-307)||(29414361-29414532)
chr8 (182-305)||(5718407-5718528)
chr8 (185-305)||(25124400-25124518)
chr8 (144-199)||(29543676-29543731)
chr8 (147-306)||(33543341-33543494)
chr8 (148-305)||(24068076-24068231)
chr8 (160-241)||(26415557-26415638)
chr8 (175-275)||(5686280-5686378)
[»] chr3 (10 HSPs)
chr3 (160-291)||(26442954-26443083)
chr3 (160-309)||(18271919-18272066)
chr3 (147-309)||(1632801-1632960)
chr3 (148-307)||(45852892-45853049)
chr3 (147-307)||(2671895-2672053)
chr3 (148-274)||(34905839-34905963)
chr3 (175-307)||(31192079-31192209)
chr3 (148-199)||(10593524-10593575)
chr3 (251-307)||(1713936-1713992)
chr3 (134-192)||(3169319-3169377)
[»] chr7 (12 HSPs)
chr7 (160-307)||(46413701-46413849)
chr7 (144-309)||(23611706-23611868)
chr7 (148-275)||(21882759-21882884)
chr7 (148-286)||(22631473-22631609)
chr7 (148-308)||(20125583-20125741)
chr7 (144-239)||(46297602-46297697)
chr7 (148-232)||(24250485-24250569)
chr7 (148-307)||(8123684-8123841)
chr7 (148-307)||(19511403-19511560)
chr7 (174-275)||(1985025-1985124)
chr7 (144-200)||(44600997-44601053)
chr7 (148-226)||(23730540-23730618)
[»] chr4 (17 HSPs)
chr4 (165-304)||(42504155-42504292)
chr4 (124-306)||(37762776-37762956)
chr4 (148-308)||(5288515-5288673)
chr4 (147-314)||(24060568-24060731)
chr4 (148-232)||(25817658-25817742)
chr4 (155-241)||(19482518-19482604)
chr4 (165-290)||(30220711-30220832)
chr4 (160-241)||(29065300-29065381)
chr4 (152-200)||(41545412-41545460)
chr4 (250-307)||(19663375-19663432)
chr4 (245-304)||(19663274-19663333)
chr4 (245-299)||(19482801-19482855)
chr4 (144-241)||(2765390-2765487)
chr4 (171-309)||(16528579-16528718)
chr4 (147-198)||(42108751-42108802)
chr4 (144-201)||(13218444-13218501)
chr4 (144-192)||(41485726-41485774)
[»] scaffold0194 (1 HSPs)
scaffold0194 (192-307)||(27067-27180)
[»] scaffold0018 (1 HSPs)
scaffold0018 (144-241)||(69947-70044)
[»] scaffold0122 (1 HSPs)
scaffold0122 (124-272)||(18605-18749)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 86 - 502
Target Start/End: Original strand, 30071704 - 30072116
Alignment:
Q  86 catttattagtcaacctactcccgcaattataaatgatcattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaat 185  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  | ||||||||||| ||||||||||||||||||||||||||||||    
T  30071704 catttattagtcaacctactcccgcaattataaatgagcattgctatttatcta--aagagtttttatctagaatttaacaagaaaaggtctcaaccaat 30071801  T
Q  186 taaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaatttt 285  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  30071802 taaatttattatttgttggaaatcatggaaggtagtggtgtgtaattgaggaaaggag--ttagcaaatacattgtcttaaaattttcttcataaatttt 30071899  T
Q  286 gtcactctatctatcatttcccattataaatgatgattaattttgtttactttacatatgttaatgcacaatttctactcactctcataagactgaacca 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  30071900 gtcactctatctatcatttcccattataaatgatgattaattttgtttactttacatatgttaatgcacaatttctactcactctcataaggttgaacca 30071999  T
Q  386 ttcttctcccacggtcagtgattctcaaatctcaatgggtatccattattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctcc 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072000 ttcttctcccacggtcagtgattctcaaatctcaatgggtatccattattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctcc 30072099  T
Q  486 accttgcatattgatga 502  Q
    |||||||||||||||||    
T  30072100 accttgcatattgatga 30072116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 3040379 - 3040218
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| || || |||||| |||||||| |||||||||||| |||||||  |    
T  3040379 gagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaag--g 3040282  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     ||||||||||||| |||||| |||||||||| ||||||||||||||| | ||||| |||||||    
T  3040281 tgttagcaaatacactgtcttaaaattttcttgataaattttgtcactgtgtctattatttccc 3040218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 30735439 - 30735282
Alignment:
Q  145 agtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggaga 244  Q
    ||||||||| |||||| || |||||||| ||||||| |||||||||||||||||||  |||||||| |||||||| || || |||||| || |||  ||     
T  30735439 agtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgggtaattaagaaaa--agt 30735342  T
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 304  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||    
T  30735341 gttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 40519168 - 40519329
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| || |||  |     
T  40519168 gagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatca-gggaggtaatgatgtgtaattaagaaaa--aa 40519264  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
      || ||||||||| |||||| |||||||||| |||| |||||||||| ||| ||||||||||||    
T  40519265 tattggcaaatacactgtcttaaaattttcttgataatttttgtcactgtatttatcatttccca 40519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 308
Target Start/End: Complemental strand, 30700999 - 30700827
Alignment:
Q  134 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattg 233  Q
    ||||||||  ||||||||||||| ||| ||  ||||||| ||||||| |||||||||||||||||||  | |||| | |||||||| || |||||||||     
T  30700999 tatttatctagagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaatta 30700900  T
Q  234 aggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
    || ||||  | ||||||||||||| |||||| ||||||| || |||||||||||||||  | |||||||||||||    
T  30700899 agaaaag--gtgttagcaaatacactgtcttaaaatttttttgataaattttgtcactgcacctatcatttccca 30700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 25493808 - 25493966
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||| | |||||||| |||||| ||||||||||||||| |||||  |||||||  ||||||| |||||||||||| ||||||   |    
T  25493808 gagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaa--tg 25493905  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 304  Q
      ||| |||||| | ||||||||||||||||  ||| || |||||||| ||||||||||||    
T  25493906 tattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 24402035 - 24402088
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 200  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  24402035 tttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttg 24402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 308
Target Start/End: Original strand, 20359904 - 20360064
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttg--gaaatcatgggaggtagtggtgtgtaattgaggaaaggagag 245  Q
    |||||||||||||| | |||||||| |||||   ||||||||| |||||  | ||   |||||||  |||| || |||||||||||| | |||||| |      
T  20359904 ttttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaaggtg-- 20360001  T
Q  246 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
    |||||||||| |  ||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  20360002 ttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 20360064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 34280194 - 34280064
Alignment:
Q  175 tctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttct 274  Q
    |||||| |||||||||||||||||||  |||||| | || || || |||| ||||||| |||||||  |  ||| |||||||| || ||| |||| || |    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatg--ttaacaaatacactgacttaaaatattat 34280097  T
Q  275 tcataaattttgtcactctatctatcatttccc 307  Q
    | ||||||| ||||||| |||||||||||||||    
T  34280096 tgataaattctgtcactgtatctatcatttccc 34280064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 24402154 - 24402195
Alignment:
Q  266 aaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||||| ||||||||||||| | |||||||||||||||    
T  24402154 aaattttcttgataaattttgtcattgtatctatcatttccc 24402195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 35413015 - 35413176
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||||  |    
T  35413015 gagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaag--g 35413112  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     |||| |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||    
T  35413113 tgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttccc 35413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 29657357 - 29657514
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||||||||||  | ||||||  ||||||| || | ||||||| |||||||| |  ||    
T  29657357 ttttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtg--tt 29657454  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  29657455 agcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccc 29657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 10061581 - 10061738
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||   ||||||| |||||||| || ||||||||| ||||||   |    
T  10061581 gagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaa--tg 10061678  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     ||||||||||| | ||||||||||||||||| ||||||||||    |||||||||||||||||    
T  10061679 tgttagcaaataaactgtcttgaaattttcttgataaattttg----tctatctatcatttccc 10061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 35149783 - 35149625
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||    |||||| ||||| || || ||| ||||| |||||||  |    
T  35149783 gagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaag--g 35149686  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 304  Q
     ||||||||||||||| |||||||||||| || ||||||||||||||| || |||||||||    
T  35149685 tgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 43537261 - 43537135
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 246  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |||||||| |||||||| |||||||||||| | ||||   | ||    
T  43537261 tttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaa--tgtgt 43537164  T
Q  247 tagcaaatacattgtcttgaaattttctt 275  Q
    || |||||||| |||||||||||||||||    
T  43537163 taacaaatacactgtcttgaaattttctt 43537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 144 - 291
Target Start/End: Original strand, 26469933 - 26470078
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||  || ||||||  | || || |||||||||||| |||||||  |    
T  26469933 gagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaag--g 26470030  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcact 291  Q
     ||||||||||||| ||| || |||||||||| ||||||||| |||||    
T  26470031 tgttagcaaatacactgttttaaaattttcttgataaattttatcact 26470078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 21540036 - 21540187
Alignment:
Q  115 ataaatgatcattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatggg 214  Q
    ||||| || ||||||||||||||||    |||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||  |||||| | |||    
T  21540036 ataaaagagcattgctatttatttaga--gagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaaggg 21540133  T
Q  215 aggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaatt 270  Q
    || || ||  |||||||| | |||||  | |||| |||||||| ||||||||||||    
T  21540134 agataatgaagtgtaattaaagaaag--gtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 23906721 - 23906605
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| | |||||||| || ||| ||||||||||||||||||||    |||||| | |||||| |||||||||||| | |||||  | |||    
T  23906721 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgtaattaaagaaag--gtgtt 23906624  T
Q  248 agcaaatacattgtcttga 266  Q
    |||||||||||||||||||    
T  23906623 agcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 11470016 - 11470101
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 232  Q
    ||||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||  |||||||| |||||||| || |||||||||    
T  11470016 tttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaatt 11470101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 49313596 - 49313662
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatca 210  Q
    |||||||||||||||||| | |||||||| |||||||  |||||||||||||||| || ||||||||    
T  49313596 gagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatca 49313662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 49401988 - 49402047
Alignment:
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 304  Q
    ||||||||||||||||  ||||||| || || ||||||||||||||| ||||||||||||    
T  49401988 gttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 44958524 - 44958465
Alignment:
Q  246 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||||||| | |||| |||||||||| ||| |||||||||  ||||||||||||||||    
T  44958524 ttagcaaatacactctcttcaaattttcttaatacattttgtca--ctatctatcatttccc 44958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 48852731 - 48852793
Alignment:
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||| |||||||||||| || ||| ||| || |||||||||||||||  ||||||||||||||    
T  48852731 gttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccc 48852793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 34475808 - 34475857
Alignment:
Q  259 tgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
    |||||| |||||||||| ||| ||||||||||| |||| |||||||||||    
T  34475808 tgtcttaaaattttcttaatacattttgtcactgtatccatcatttccca 34475857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 20142957 - 20143118
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||  |||||||| || ||||| || ||||||||| |||||||  |    
T  20142957 gagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaag--g 20143054  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     ||||| ||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  20143055 tgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccc 20143118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 13716829 - 13716673
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||  | ||||||  ||||||| | |||||||||| || ||||  |    
T  13716829 gagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaagaaaag--g 13716732  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcat 302  Q
     ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||    
T  13716731 tgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 124 - 310
Target Start/End: Complemental strand, 19945861 - 19945679
Alignment:
Q  124 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtgg 223  Q
    ||||||||||||||||    |||||||||| |||||||||  || |||| |||||   |||||||||||||||||||  |||||| | |||||||| |||    
T  19945861 cattgctatttatttaga--gagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatgg 19945764  T
Q  224 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccatt 310  Q
    ||||||||| ||||||| | | ||| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||| |||||    
T  19945763 tgtgtaattaaggaaag-ata-ttaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattttccatt 19945679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 307
Target Start/End: Original strand, 14131161 - 14131306
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 259  Q
    |||| |||||||| ||||  ||||||||||| |||||||||  |||||||| | ||| || |||||||||||| |||||| | |  |||||||||||| |    
T  14131161 tttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtg--ttagcaaatacact 14131258  T
Q  260 gtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     |||| |||||||||||||||||||||||||| |||||||||||||||    
T  14131259 atcttaaaattttcttcataaattttgtcactgtatctatcatttccc 14131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 27007174 - 27007313
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 259  Q
    |||| |||||||  ||||||||||| |||||||||||||||  |||||||| |||||||| | ||||||| || ||||||  || |||| |||||||| |    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaa--agtgttaacaaatacact 27007271  T
Q  260 gtcttgaaattttcttcataaattttgtcactctatctatca 301  Q
    ||||| |||||||||| ||||||||||||||| |||||||||    
T  27007272 gtcttaaaattttcttgataaattttgtcactgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 37714412 - 37714538
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||| |||||||||  |||| || |||||||||||| |||||||  |    
T  37714412 gagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaag--g 37714509  T
Q  244 agttagcaaatacattgtcttgaaatttt 272  Q
     ||||||||||||| || ||| |||||||    
T  37714510 tgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 3167868 - 3168045
Alignment:
Q  125 attgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggt 224  Q
    |||||||||||||||  |  ||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||| ||||||||  | ||||| || |    
T  3167868 attgctatttatttaaaa--agtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgat 3167965  T
Q  225 gtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||| | |||||  | ||||||||||| | | | |  |||||||||| ||||||||||||||| |||||||||||||||    
T  3167966 gtgtaattaaagaaag--gtgttagcaaatatactatttaaaaattttcttgataaattttgtcact-tatctatcatttccc 3168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 38320319 - 38320190
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||  ||||||| || ||||||| | ||||||   |    
T  38320319 gagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaa--tg 38320222  T
Q  244 agttagcaaatacattgtcttgaaattttctt 275  Q
     |||| |||||||| |||||| ||||||||||    
T  38320221 tgttatcaaatacactgtcttaaaattttctt 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 32976137 - 32975978
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggt--agtggtgtgtaattgaggaaaggagag 245  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||  | ||||  | |||| ||||||| || ||||  | |    
T  32976137 ttttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatgtaattaagaaaag--gtg 32976040  T
Q  246 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||| ||||||| ||| ||||||||||||| ||| || |||||  | |||||||||||||||    
T  32976039 ttagtaaatacactgttttgaaattttcttgatacatattgtcgatgtatctatcatttccc 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 35457368 - 35457484
Alignment:
Q  124 cattgctatttatttat-cag-gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagt 221  Q
    ||||||||||||||||| ||  ||||||||||||||||||||  |||||||||| |||| ||||||||||| ||||||   ||||||||  ||||||| |    
T  35457368 cattgctatttatttatgcatagagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaat 35457466  T
Q  222 ggtgtgtaattgaggaaa 239  Q
    ||||||||||| ||||||    
T  35457467 ggtgtgtaattaaggaaa 35457484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 37899622 - 37899547
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggta 219  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||| | ||||||  |||||||    
T  37899622 gagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggta 37899547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 27407411 - 27407572
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||| ||||||||||||| | ||||||||| | ||| |||||||||||||||||||   |||||||| || || || || ||||||||| ||||||   |    
T  27407411 gagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa--tg 27407508  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
      |||||||||||| | |||| ||||||| ||| |  | ||||||||| ||||||||||||||||    
T  27407509 tattagcaaatacagtatcttaaaattttgttc-ttgagtttgtcactgtatctatcatttccca 27407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 31645217 - 31645074
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaag-gtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagga 242  Q
    |||||||||||||||||||| ||| ||||  |||| |||||||||||||| | |||||  |||||||| |  | ||| || ||||||||| || |||||     
T  31645217 gagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaattaagaaaagg- 31645119  T
Q  243 gagttagcaaatacattgtcttgaaattttcttcataaattttgtc 288  Q
    | ||||||||||||||| |||| |||||||| | ||||||||||||    
T  31645118 gtgttagcaaatacattctcttaaaattttc-tgataaattttgtc 31645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 300
Target Start/End: Original strand, 4434290 - 4434443
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatg---ggaggtagtggtgtgtaattgaggaaaggaga 244  Q
    |||||| ||||||| | |||||||||||| ||  |||||||||||||||||||  | |||||| |   ||||||| |||||||||||| || |||   |     
T  4434290 ttttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagtaaa--tgt 4434387  T
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatc 300  Q
    ||| ||||||| ||||| ||||||||||||| ||| | ||||||||| ||| ||||    
T  4434388 gttggcaaatatattgttttgaaattttcttaatacagtttgtcactgtatatatc 4434443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  224 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    ||||||||| ||||||  || ||||||||||||| | |||| ||||||  || ||||||||||||||| |||||||||||||||    
T  31264827 tgtgtaattaaggaaa--agtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 37899533 - 37899469
Alignment:
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 309  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||||||||| |||||||||||||||||    
T  37899533 gttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttcccat 37899469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 24183960 - 24184047
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaat 231  Q
    ||||||||||  | |||||| ||||||||||| ||| |||||||||||| |||||||  |||| |||   |||||| |||||||||||    
T  24183960 gagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatggtgtgtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 24184084 - 24184118
Alignment:
Q  281 attttgtcactctatctatcatttcccattataaa 315  Q
    ||||||||||| |||||||||||||||||||||||    
T  24184084 attttgtcactgtatctatcatttcccattataaa 24184118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 31845453 - 31845544
Alignment:
Q  194 ttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgt 287  Q
    |||||||| |||||||| | |||||| |||||||||||| ||| |||    ||||||||||||| |||||  |||||||||| ||||| |||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaag--atgttagcaaatacactgtctaaaaattttcttgataaaatttgt 31845544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 144 - 306
Target Start/End: Complemental strand, 32871872 - 32871711
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||  |     
T  32871872 gagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaa--aa 32871775  T
Q  244 agttagcaaatacattgtctt-gaaattttcttcataaattttgtcactctatctatcatttcc 306  Q
     ||||| ||||||| |||||| ||||||||||| ||||||||||||| | ||||||||||||||    
T  32871774 tgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 144 - 309
Target Start/End: Complemental strand, 6784821 - 6784658
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    ||||||||||||| |||||| ||| ||||| ||||| ||||||||||||||||||||| |||||||| ||||| || |||||||||||| || ||||  |    
T  6784821 gagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaag--g 6784724  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 309  Q
     ||||||||||||| | ||| ||||||||||| ||  ||||||||||| |||||||||||||||||    
T  6784723 tgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttcccat 6784658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 34713490 - 34713651
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||  | |||||| |||| ||| ||||||||| || || ||||  |    
T  34713490 gagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaag--g 34713587  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
     |||| |||||||| | |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  34713588 tgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccc 34713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 2130611 - 2130452
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    ||||||| || || |||||| ||||||||  ||||||||||||||||||||||||||  ||||||||  ||||||  | |||||||||| |||||||  |    
T  2130611 gagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaag--g 2130514  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttc 305  Q
     |||||||||||||  || ||||||||||||| ||||||||| | | | |||||||||||||    
T  2130513 tgttagcaaatacaccgttttgaaattttcttgataaattttatgattatatctatcatttc 2130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 289
Target Start/End: Original strand, 28867178 - 28867317
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| |  ||||||| || |||| |||||||||||||||||||||||||||||  ||||||| | || ||||||| ||||||   |  ||    
T  28867178 ttttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaa--tgtttt 28867275  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtca 289  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  28867276 agcaaatacattgtcttgaaattttcttgatacaatttgtca 28867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 3855807 - 3855692
Alignment:
Q  191 ttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcac 290  Q
    ||||||||||  |||||| | |||| ||| |  ||||||||| |||||||| |  ||||||| |||| ||||||||||||||||| ||||||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtg--ttagcaa-tacactgtcttgaaattttcttgataaattttgtcac 3855711  T
Q  291 tctatctatcatttcccat 309  Q
    | |||||||||||||||||    
T  3855710 tgtatctatcatttcccat 3855692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 6519233 - 6519285
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 200  Q
    ||||||||| |||| | |||||||| ||||||  |||||||||||||||||||    
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 6519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 11301828 - 11301880
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttattt 199  Q
    ||||||||||||||| | || ||||||||||||  ||||| ||||||||||||    
T  11301828 tttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttattt 11301880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 144 - 311
Target Start/End: Complemental strand, 38585207 - 38585042
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||||||||||||| |||||||| || ||||  |||||||||||| |||||  ||||||||  ||||||| | |||||||||| | ||||  ||    
T  38585207 gagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaa--ag 38585110  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccatta 311  Q
     ||||||||||||||||  ||||||||||||| ||||||||||||| |  ||||||||||||||||||    
T  38585109 tgttagcaaatacattgctttgaaattttcttgataaattttgtcattggatctatcatttcccatta 38585042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 29414361 - 29414532
Alignment:
Q  134 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattg 233  Q
    ||||||||  ||||||||||||| |||| | |||||||| |||||| ||||||||||||||||||||  | |||||| || ||||| |||||| |||||     
T  29414361 tatttatctagagtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaatta 29414460  T
Q  234 aggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||  | |||| ||||| || ||| ||||||||||||| ||| ||||| |||   |||||||||||||||    
T  29414461 aggaaag--gtgttaacaaatgcactgttttgaaattttcttgatatattttatcaaggtatctatcatttccc 29414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 5718528 - 5718407
Alignment:
Q  182 caattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaa 281  Q
    ||||||||||| |||||||| |||||||| || ||||| |||||||||||| ||||||   | ||||||||||||| |||||| |||||||||| ||| |    
T  5718528 caattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaa--tgtgttagcaaatacactgtcttaaaattttcttgatata 5718431  T
Q  282 ttttgtcactctatctatcatttc 305  Q
     ||||||| | |||||||||||||    
T  5718430 gtttgtcattgtatctatcatttc 5718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 25124400 - 25124518
Alignment:
Q  185 ttaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattt 284  Q
    ||||| ||||||||||  |||||||| | ||| || || ||||||||| || |||||    ||| |||||||| ||||||||||||||||| ||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggta--ttaacaaatacactgtcttgaaattttcttgataaattt 25124497  T
Q  285 tgtcactctatctatcatttc 305  Q
    ||||||| |||||||||||||    
T  25124498 tgtcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 29543731 - 29543676
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttattt 199  Q
    ||||||||||||| |||||| ||||||||  |||||||||||||||||||||||||    
T  29543731 gagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 33543341 - 33543494
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 246  Q
    |||||||||| ||||||  || |||| |||||||||||| ||||||||||||||   ||||||| ||||| || || ||||||||| |  ||||| |  |    
T  33543341 tttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtg--t 33543436  T
Q  247 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcc 306  Q
    || |||||| | |||||||| |||||||| |||||||||||||   ||||||||||||||    
T  33543437 taacaaatatactgtcttgatattttcttgataaattttgtca--gtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 24068231 - 24068076
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| | | |||||| |||||| ||||||||||||||||||||    ||||||  ||||||  |||||||||||| |||||||    |||    
T  24068231 ttttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttg-ccaaaatcaaaggaggtgatggtgtgtaattaaggaaag--atgtt 24068135  T
Q  248 agcaaataca-ttgtcttgaaattttcttcataaattttgtcactctatctatcatttc 305  Q
    || |||||||   ||||| | |||||||| ||| | ||||||||| |||||||||||||    
T  24068134 aggaaatacagaagtcttaacattttcttaatacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 26415557 - 26415638
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 241  Q
    |||| |||||||||||||||||||||||||||| |||||||  |||||| |   ||| || || ||||||||| ||||||||    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaagg 26415638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 5686378 - 5686280
Alignment:
Q  175 tctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttct 274  Q
    |||||| |||||||||||||||||||  |||||||| |||||||| |  | ||||||| | ||||   | ||||||||||||  | ||||||||||||||    
T  5686378 tctcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaa--tgtgttagcaaatacgctatcttgaaattttct 5686281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 26442954 - 26443083
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 259  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||||||| |  ||||  | |||| |||||||| |    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaag--gtgttaccaaatacact 26443051  T
Q  260 gtcttgaaattttcttcataaattttgtcact 291  Q
    |||||||||||||||| |||||||||||||||    
T  26443052 gtcttgaaattttcttgataaattttgtcact 26443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 160 - 309
Target Start/End: Complemental strand, 18272066 - 18271919
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 259  Q
    |||| ||||||||  ||||||||||||||||||||||||||  ||||||||  ||||||| |||||||||||| | |||||  | ||||||||||||  |    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaag--gtgttagcaaatactct 18271969  T
Q  260 gtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 309  Q
     |||| |||||||||| ||||||||||||||| |||||||||||| ||||    
T  18271968 atcttaaaattttcttgataaattttgtcactatatctatcattttccat 18271919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 1632801 - 1632960
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 246  Q
    |||||||||| |||| | |||||||| |||||||| |||||||||||||||||   ||||||||  ||||||| |||||||||||| | |||| | |  |    
T  1632801 tttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtg--t 1632897  T
Q  247 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 309  Q
    || |||||||| ||||||| |||||| || ||||||||||||||| |||||||||||||||||    
T  1632898 taacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttcccat 1632960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 45853049 - 45852892
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| | |||||||| ||||||||||||||||||| ||||||| | | ||||| ||||| || || | ||||||| || ||||  | |||    
T  45853049 ttttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatgatatgtaattaagaaaag--gtgtt 45852952  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    ||||||||||  ||||| |||||||||| ||| | ||||||||| |||||||||||||||    
T  45852951 agcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttccc 45852892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 2671895 - 2672053
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 246  Q
    ||||||||||||||| | ||||||||||| ||| |||||||||||||||||| | || ||||||  |||| || || ||||||||| |||||||    ||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaag--atgt 2671992  T
Q  247 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    || |||||||| |||||| |||||||||| ||| ||||||||||| |||| | ||||||||    
T  2671993 taacaaatacactgtcttaaaattttcttgatacattttgtcactttatcaagcatttccc 2672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 34905839 - 34905963
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| |  ||||||| |||||| ||| |||||||||||||||||   ||||||  ||||||| || ||| ||||| |||||||  | |||    
T  34905839 ttttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaag--gtgtt 34905936  T
Q  248 agcaaatacattgtcttgaaattttct 274  Q
    |||||||||| |||||| |||||||||    
T  34905937 agcaaatacactgtcttaaaattttct 34905963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 31192079 - 31192209
Alignment:
Q  175 tctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttct 274  Q
    |||||| |||||||||||||||||| ||| |||| | | ||| || | |||||||||| ||||||| | | |||||||||||  |||||| |||||||||    
T  31192079 tctcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaag-ata-ttagcaaataccctgtcttaaaattttct 31192176  T
Q  275 tcataaattttgtcactctatctatcatttccc 307  Q
    | ||| | ||| ||||| |||||||||||||||    
T  31192177 tgatacagtttatcactgtatctatcatttccc 31192209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 10593575 - 10593524
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttattt 199  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  10593575 ttttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttattt 10593524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 1713992 - 1713936
Alignment:
Q  251 aaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    ||||||| ||||||||||||||| | ||||||||| ||||| ||| |||||||||||    
T  1713992 aaatacactgtcttgaaattttcctaataaattttatcactgtatttatcatttccc 1713936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 3169377 - 3169319
Alignment:
Q  134 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaattt 192  Q
    ||||||||  |||||||||||||||||| | ||||||||||| | | ||||||||||||    
T  3169377 tatttatctagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattt 3169319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 307
Target Start/End: Complemental strand, 46413849 - 46413701
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttgg---aaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatac 256  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||   |||||| |||||||| || ||||||||| |||||||| |  ||| |||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtg--ttaacaaatac 46413752  T
Q  257 attgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    | |||||||||||||| || ||||||||||||| | |||||||||||||||    
T  46413751 actgtcttgaaatttttttaataaattttgtcaatgtatctatcatttccc 46413701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 309
Target Start/End: Complemental strand, 23611868 - 23611706
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 243  Q
    |||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||  |||||||| | |||||| |||  ||||||| || ||||  |    
T  23611868 gagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgg-atgtaattaagtaaag--g 23611772  T
Q  244 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 309  Q
     |||| |||||||| ||| ||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  23611771 tgttaacaaatacactgttttgaaattttcttgataaattttatcattgtatctatcatttcccat 23611706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 21882884 - 21882759
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||| ||||||| |  |||||||| ||||| ||||||||||||||||||||  |||||||| |||||||| |||||||||||| ||||||  || |||    
T  21882884 ttttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa--agtgtt 21882787  T
Q  248 agcaaatacattgtcttgaaattttctt 275  Q
    |||||||||| |||||||||||||||||    
T  21882786 agcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 22631473 - 22631609
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||  |||| || | |||||||||| |||||||  | |||    
T  22631473 ttttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaag--gtgtt 22631570  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttg 286  Q
    ||| ||||||  |||||||||||||||| ||||| ||||    
T  22631571 agctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 148 - 308
Target Start/End: Original strand, 20125583 - 20125741
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| | |||||||| || ||| |||||||||||||||| ||||  ||||| |  | || || |||||||||||| | ||||||    ||    
T  20125583 ttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaaggta--tt 20125680  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
    |||||||||| |||||| |||||||||| ||||| ||||||| | ||||||||||||||||    
T  20125681 agcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccca 20125741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 46297602 - 46297697
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaa 239  Q
    |||||||||||||||||||| |||||||| |||||| ||| || |||||||||||||| | |||||| ||||| || |||||||||||| ||||||    
T  46297602 gagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaa 46297697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 24250569 - 24250485
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 232  Q
    |||||||||||||| | ||||||||| ||| | |||||| |||||||||||||| |||||||| |||||||| |||| |||||||    
T  24250569 ttttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaatt 24250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 8123684 - 8123841
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||| ||||| | |||||||| ||||||  ||||||||||||||||||||||||||| |  |||| || |  ||| ||||| | |||||  | |||    
T  8123684 ttttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataataatgtataattaaagaaag--gtgtt 8123781  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||| |  ||| | |||||||||  ||| ||||||| ||| |||||||||||||||    
T  8123782 agcaaatataccgtcctaaaattttctggatacattttgttactatatctatcatttccc 8123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 19511403 - 19511560
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||||||||||| |  ||||||| || | | |||||||||||| |||||| ||||||||||  |||| || | ||| |||||| |||||||  | |||    
T  19511403 ttttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaattaaggaaag--gtgtt 19511500  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |  ||||||| ||||| |||||||| || ||||| ||| |||||  ||||||||||||||    
T  19511501 aataaatacactgtctcgaaatttttttgataaaatttatcactgcatctatcatttccc 19511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 1985025 - 1985124
Alignment:
Q  174 gtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttc 273  Q
    |||||| ||||||||||||||||||||  |||||||| || ||||| |||| ||||||| ||||||   | ||||||||||||| | |||| ||||||||    
T  1985025 gtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaa--tgtgttagcaaatacactatcttaaaattttc 1985122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44600997 - 44601053
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 200  Q
    ||||||||||||||||||| | ||||||| || |||| |||||||||||||||||||    
T  44600997 gagtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttg 44601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 23730618 - 23730540
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgt 226  Q
    |||||||||||||| | |||||||| || ||| | ||||||||| ||||||||| |||||||| | |||||| ||||||    
T  23730618 ttttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatggtgt 23730540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 42504292 - 42504155
Alignment:
Q  165 caagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtctt 264  Q
    ||||||||| | ||||||||||||||||||||||||  |||||||| |||||||| || ||||||||| |||||||  | |||| |||||||| ||||||    
T  42504292 caagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaag--gtgttaacaaatacactgtctt 42504195  T
Q  265 gaaattttcttcataaattttgtcactctatctatcattt 304  Q
     |||||||||| ||| ||||||||| | ||||||||||||    
T  42504194 aaaattttcttgatacattttgtcattgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 37762776 - 37762956
Alignment:
Q  124 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctca--accaattaaatttgttatttgttggaaatcatgggaggtagt 221  Q
    ||||||||||||| ||  | ||||||| |||||||||||| |||||||| | | ||  |||||||||||||||||||||  | || |||  |||  || |    
T  37762776 cattgctatttatcta--aagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaataat 37762873  T
Q  222 ggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcc 306  Q
    | ||||||||| ||||||  || |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  37762874 gatgtgtaattaaggaaa--agtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcatttcc 37762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 148 - 308
Target Start/End: Original strand, 5288515 - 5288673
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 247  Q
    |||||| ||||||| |  ||||||| |||||| ||||||||||||||||||||  | |||||| ||||| || |||||||||||| |  |||   | |||    
T  5288515 ttttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaa--aaaaatgtgtt 5288612  T
Q  248 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 308  Q
    |||||||| |  ||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  5288613 agcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 5288673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 314
Target Start/End: Original strand, 24060568 - 24060731
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 246  Q
    ||||||||||||||| | |||||||| |||| | | |||||||||||||||| ||| ||||||| ||||| || |||||||||||| ||||||   | ||    
T  24060568 tttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa--tgtgt 24060665  T
Q  247 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccattataa 314  Q
    ||||||||||| ||| || |||||||||| ||| |  |||||||| || | | |||||||||||||||    
T  24060666 tagcaaatacactgttttaaaattttcttaataca--ttgtcactgtaccaagcatttcccattataa 24060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 25817658 - 25817742
Alignment:
Q  148 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 232  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |||||||| | |||||| ||||||||||||    
T  25817658 ttttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaatt 25817742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 19482518 - 19482604
Alignment:
Q  155 aagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 241  Q
    ||||||||| ||||||||  | ||||||||||||||||||||||||  |||||||| |||| ||| |||||||||||| ||||||||    
T  19482518 aagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaagg 19482604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 30220711 - 30220832
Alignment:
Q  165 caagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtctt 264  Q
    ||||||||||| ||| |||||||| ||||||||| |  |||||||| ||||| || |||||||||||| ||||||  || ||||||||||||| ||||||    
T  30220711 caagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaa--agtgttagcaaatacactgtctt 30220806  T
Q  265 gaaattttcttcataaattttgtcac 290  Q
     |||||||||| ||| ||||||||||    
T  30220807 aaaattttcttgatacattttgtcac 30220832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 29065381 - 29065300
Alignment:
Q  160 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 241  Q
    |||| |||||||| ||||||| |||||||||||||||||||  ||||||||  ||||||| |||||||||||| | ||||||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaagg 29065300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 41545412 - 41545460
Alignment:
Q  152 atcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 200  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41545412 atcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttg 41545460  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 19663375 - 19663432
Alignment:
Q  250 caaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 307  Q
    |||||||| | |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  19663375 caaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttccc 19663432  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 19663333 - 19663274
Alignment:
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 304  Q
    |||| |||||||| |||||||| ||||| || ||||||||||||||| ||||||||||||    
T  19663333 gttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 19482801 - 19482855
Alignment:
Q  245 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctat 299  Q
    |||| |||||| | ||||||||||||||||| ||||||||||||||| |||||||    
T  19482801 gttaacaaataaactgtcttgaaattttcttgataaattttgtcactgtatctat 19482855  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 2765487 - 2765390
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 241  Q
    |||||||||| |||| || | ||||||||||||| | |||||||||||||||||| |    |||||||||||| || || ||||||||| | ||||||    
T  2765487 gagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaagg 2765390  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 16528579 - 16528718
Alignment:
Q  171 aaggtctcaaccaattaaatttgttatttgttggaaatcatggga---ggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaa 267  Q
    ||||||||| ||||||||||||||||||||| ||||||||   ||     || |||||||||||| | ||||   | |||| |||||||| | |||| ||    
T  16528579 aaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatggtgtgtaattaaagaaa--tgtgttaacaaatacactatcttaaa 16528676  T
Q  268 attttcttcataaattttgtcactctatctatcatttcccat 309  Q
    |||||||| ||| || ||||| || |||||||||||||||||    
T  16528677 attttcttgatacatgttgtcgctgtatctatcatttcccat 16528718  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 42108802 - 42108751
Alignment:
Q  147 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatt 198  Q
    ||||||||||||||| | |||||||| || ||| ||||||||||||||||||    
T  42108802 tttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 13218444 - 13218501
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgt 201  Q
    |||||||||| || ||||||  |||||||||||||   ||||||||||||||||||||    
T  13218444 gagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttgt 13218501  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 41485726 - 41485774
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaattt 192  Q
    |||||||||||||||||| | ||||||||||| | | ||||||||||||    
T  41485726 gagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattt 41485774  T

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Target: scaffold0194 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 27180 - 27067
Alignment:
Q  192 tgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcact 291  Q
    |||||||||  |||||||| ||||| || | | |||||||| |||||||| |  ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtg--ttaacaaatacactgtcttgaaattttcttgataaattttgtcact 27083  T
Q  292 ctatctatcatttccc 307  Q
     |||||||||||||||    
T  27082 gtatctatcatttccc 27067  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 70044 - 69947
Alignment:
Q  144 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 241  Q
    ||||||||||| | |||| | ||||||||||| ||| |||||||||||||||||| |  |||||||| ||||| || ||| |||||||| ||||||||    
T  70044 gagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaagg 69947  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 18605 - 18749
Alignment:
Q  124 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtgg 223  Q
    ||||||||||||| ||  | ||| |||||| ||||||| | |||||||| |||| |  |||||||||||||||||||| | |||| | ||||| || |||    
T  18605 cattgctatttatcta--aagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatgg 18702  T
Q  224 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaatttt 272  Q
    || |||||| ||||||   | ||||||||||||| ||| ||||| ||||    
T  18703 tgagtaattaaggaaa--tgtgttagcaaatacactgttttgaattttt 18749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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