View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_22 (Length: 273)
Name: NF19085_low_22
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 1189200 - 1189438
Alignment:
| Q |
22 |
aacgaccttactctatgcaactcaaaaactaatgagaaaatagaatttcgttagacggcacaaaaaataaaattgtgagattattgaatgagtactgtaa |
121 |
Q |
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| T |
1189200 |
aacgaccttactctatgcaactcaaaa-ctaatgagaaaatagaatttcgttagatggcacaaaaaataaaattgtgagattattgaatgagtactgtaa |
1189298 |
T |
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| Q |
122 |
tcacatttttaactaaaaaatttcacaaaatttactccagagtattagtcaatataatcattgcttgtgacaaataacggtgat-tataaaactctataa |
220 |
Q |
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| T |
1189299 |
tcacatttttaactaaaaaatttcacaaaatttactccatagtattagtc-----aatcattgcttgtgacaaataacggtgatctataaaactctataa |
1189393 |
T |
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| Q |
221 |
tttagattccatcagaccaacacacattttcattggacctatgct |
265 |
Q |
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| T |
1189394 |
tttagattccatcagaccaacacacattttcattggacctgtgct |
1189438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 41762281 - 41762223
Alignment:
| Q |
94 |
ttgtgagattattgaatgagtactgtaatcacatttttaactaaaaaatttcacaaaat |
152 |
Q |
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| T |
41762281 |
ttgtgagattgttgaataagtattgtgttcacatttttaactaaaaaatttcacaaaat |
41762223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 28100363 - 28100409
Alignment:
| Q |
94 |
ttgtgagattattgaatgagtactgtaatcacatttttaactaaaaa |
140 |
Q |
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| T |
28100363 |
ttgtgagattgttgaatgagtagtgtgttcacatttttaactaaaaa |
28100409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 28594222 - 28594280
Alignment:
| Q |
94 |
ttgtgagattattgaatgagtactgtaatcacatttttaactaaaaaatttcacaaaat |
152 |
Q |
| |
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|||||||||| ||||||||| | | || ||||||||||||||||||| | ||||||||| |
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| T |
28594222 |
ttgtgagattgttgaatgagcattttattcacatttttaactaaaaagtctcacaaaat |
28594280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 42658017 - 42657971
Alignment:
| Q |
94 |
ttgtgagattattgaatgagtactgtaatcacatttttaactaaaaa |
140 |
Q |
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| T |
42658017 |
ttgtgagattgttgaatgagtattgtgttcacatttttaactaaaaa |
42657971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 11007022 - 11007067
Alignment:
| Q |
94 |
ttgtgagattattgaatgagtactgtaatcacatttttaactaaaa |
139 |
Q |
| |
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|||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
11007022 |
ttgtgagattgttgaatgagtattgtgttcacatttttaactaaaa |
11007067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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