View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_23 (Length: 271)

Name: NF19085_low_23
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_23
NF19085_low_23
[»] chr4 (5 HSPs)
chr4 (1-256)||(53214394-53214651)
chr4 (59-133)||(11181475-11181549)
chr4 (78-128)||(27059341-27059391)
chr4 (107-156)||(9074413-9074462)
chr4 (115-172)||(29152290-29152347)
[»] chr8 (4 HSPs)
chr8 (57-157)||(17018577-17018676)
chr8 (57-157)||(17549014-17549113)
chr8 (68-144)||(2287709-2287785)
chr8 (59-140)||(12733599-12733680)
[»] chr6 (5 HSPs)
chr6 (111-162)||(9437516-9437567)
chr6 (78-145)||(32427760-32427827)
chr6 (110-157)||(33680732-33680779)
chr6 (57-157)||(32419901-32420001)
chr6 (57-157)||(32425742-32425842)
[»] chr1 (2 HSPs)
chr1 (95-158)||(32979388-32979450)
chr1 (57-151)||(7492615-7492709)
[»] chr3 (2 HSPs)
chr3 (108-146)||(26719526-26719564)
chr3 (105-158)||(26741017-26741070)
[»] chr2 (1 HSPs)
chr2 (7-49)||(6858711-6858753)
[»] scaffold0150 (1 HSPs)
scaffold0150 (105-157)||(10915-10967)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 53214394 - 53214651
Alignment:
Q  1 aatcttgtgtgagttaacttacgtaggttataaaccctgtgtgagttaaaccaaa--taccaatttatagaaggttctatgcgtcgtggaccatataaac 98  Q
    |||| |||||||||||||| |||||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  53214394 aatcctgtgtgagttaactcacgtaggttataaaccatgcgtgagttaaaccaaacataccaatttatagaaggttctatgcgtcgtggaccatataaac 53214493  T
Q  99 tattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcaca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214494 tattgatgcaatgtggaccacagaaaaatcttgtatttgactgattcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcaca 53214593  T
Q  199 ttcttgacatgttttagatgtaatgatctgaaccactaaaatattgtttatggattat 256  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53214594 ttcttgacatgtttcagatgtaatgatctgaaccactaaaatattgtttatggattat 53214651  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 11181549 - 11181475
Alignment:
Q  59 caatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgta 133  Q
    ||||||||||||| || |||||||| || | |||| ||||||||  ||| |||||||||| | ||||||||||||    
T  11181549 caatttatagaagtttttatgcgtcatgcatcatagaaactattagtgcgatgtggaccatacaaaaatcttgta 11181475  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 27059391 - 27059341
Alignment:
Q  78 tgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatc 128  Q
    |||||||||||||| ||||||| | | |||||||||||||| |||||||||    
T  27059391 tgcgtcgtggaccacataaactgtcggtgcaatgtggaccatagaaaaatc 27059341  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 9074413 - 9074462
Alignment:
Q  107 caatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 156  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||| ||||    
T  9074413 caatgtggaccacataaaaatcttgtatttgacagattcggattatataa 9074462  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 29152290 - 29152347
Alignment:
Q  115 accacagaaaaatcttgtatttgactggttcagattaaataatccaaaatatgacaaa 172  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||   ||||||||||||    
T  29152290 accacaaaaaaaccttatatttgactggttcatattaaataatatgaaatatgacaaa 29152347  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 17018676 - 17018577
Alignment:
Q  57 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 156  Q
    ||||||||||||||| |||  ||| |||||||||| ||||||  ||  |||||||||||||||| |||| || |||| ||||||||||||||||| ||||    
T  17018676 accaatttatagaag-ttcagtgcatcgtggaccacataaacatttagtgcaatgtggaccacaaaaaattcatgtacttgactggttcagattatataa 17018578  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 17549113 - 17549014
Alignment:
Q  57 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 156  Q
    ||||||||||||||| |||  ||| |||||||||| ||||||  ||  |||||||||||||||| |||| || |||| ||||||||||||||||| ||||    
T  17549113 accaatttatagaag-ttcagtgcatcgtggaccacataaacatttagtgcaatgtggaccacaaaaaattcatgtacttgactggttcagattatataa 17549015  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 2287709 - 2287785
Alignment:
Q  68 gaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggtt 144  Q
    |||| |||| ||| |||||||||||||||| | | | || ||||||||||||||||||||| |||| |||| |||||    
T  2287709 gaagtttctttgcctcgtggaccatataaattgtcggtgtaatgtggaccacagaaaaatcatgtacttgattggtt 2287785  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 12733599 - 12733680
Alignment:
Q  59 caatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgact 140  Q
    |||||||||||||||| | ||| || | || || ||||| | ||| ||||||||| |||||| |||||||||||| ||||||    
T  12733599 caatttatagaaggttatgtgcatcattgatcacataaattgttggtgcaatgtgtaccacataaaaatcttgtacttgact 12733680  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 9437516 - 9437567
Alignment:
Q  111 gtggaccacagaaaaatcttgtatttgactggttcagattaaataatccaaa 162  Q
    ||||||||||||||||||||||| ||||||  |||| |||| ||||||||||    
T  9437516 gtggaccacagaaaaatcttgtacttgactaattcatattatataatccaaa 9437567  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 32427827 - 32427760
Alignment:
Q  78 tgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttc 145  Q
    |||||||||||||| ||||| | | | |||||| ||||||||||||||||| |||| || ||||||||    
T  32427827 tgcgtcgtggaccaaataaattgtcggtgcaatatggaccacagaaaaatcatgtacttaactggttc 32427760  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 33680779 - 33680732
Alignment:
Q  110 tgtggaccacagaaaaatcttgtatttgactggttcagattaaataat 157  Q
    ||||||||||||||||||  |||| ||||||||||||||||| |||||    
T  33680779 tgtggaccacagaaaaattatgtacttgactggttcagattatataat 33680732  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 32420001 - 32419901
Alignment:
Q  57 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 156  Q
    ||||||||||||||  || |||||| ||| ||||||| ||| ||||| | |||||| ||||||| ||||||  |||  |||||| |||| ||||| ||||    
T  32420001 accaatttatagaattttttatgcgacgtagaccatagaaattattggttcaatgtagaccacataaaaattgtgtgcttgactagttcggattatataa 32419902  T
Q  157 t 157  Q
    |    
T  32419901 t 32419901  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 32425842 - 32425742
Alignment:
Q  57 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 156  Q
    ||||||||||||||  || |||||| ||| ||||||| ||| ||||| | |||||| ||||||| ||||||  |||  |||||| |||| ||||| ||||    
T  32425842 accaatttatagaattttttatgcgacgtagaccatagaaattattggttcaatgtagaccacataaaaattgtgtgcttgactagttcggattatataa 32425743  T
Q  157 t 157  Q
    |    
T  32425742 t 32425742  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 32979450 - 32979388
Alignment:
Q  95 aaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataatc 158  Q
    ||||||| |||||||| |||| |||| |||| ||||||| ||||||||||||||||| ||||||    
T  32979450 aaactatcgatgcaatatggatcacataaaa-tcttgtacttgactggttcagattatataatc 32979388  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 7492709 - 7492615
Alignment:
Q  57 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagatta 151  Q
    ||||||||||||||| || | |||||||| ||||||||||| |   | |||||||| || || | |||||||||||| |||| |||||| |||||    
T  7492709 accaatttatagaagtttttgtgcgtcgtagaccatataaattgccggtgcaatgttgatcatataaaaatcttgtacttgaatggttccgatta 7492615  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 26719564 - 26719526
Alignment:
Q  108 aatgtggaccacagaaaaatcttgtatttgactggttca 146  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  26719564 aatgtggaccacatcaaaatcttgtatttgactggttca 26719526  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 26741070 - 26741017
Alignment:
Q  105 tgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataatc 158  Q
    |||||||||||||| |  |||||||||| ||||||||||||| |||| ||||||    
T  26741070 tgcaatgtggaccatatcaaaatcttgtgtttgactggttcaaattatataatc 26741017  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 6858711 - 6858753
Alignment:
Q  7 gtgtgagttaacttacgtaggttataaaccctgtgtgagttaa 49  Q
    ||||||||||||| |||||||||||||||| || |||||||||    
T  6858711 gtgtgagttaactcacgtaggttataaaccttgcgtgagttaa 6858753  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 10915 - 10967
Alignment:
Q  105 tgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataat 157  Q
    |||||||||||| ||| |||| || |||| ||||||||||||||||| |||||    
T  10915 tgcaatgtggacaacaaaaaattcatgtacttgactggttcagattatataat 10967  T

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