View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_26 (Length: 265)
Name: NF19085_low_26
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 43095457 - 43095597
Alignment:
| Q |
125 |
gttcagtccaatcaatacatttatatgctttgattttgttttcttaaacaaaatctgtactaaagtggccaatacatttgcagcctattggagaaaaatg |
224 |
Q |
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| T |
43095457 |
gttcagtccaatcaatacatttatatgctttgattttgttttcttaaacaaaatctgcactaaagtggccaatacatttgcagcctattggagaaaaatg |
43095556 |
T |
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| Q |
225 |
ggattatagttcacaatcaaaggagcaaatccaagcaagat |
265 |
Q |
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| T |
43095557 |
ggattatagttcacaatcaaaggagcaaatccaagcaagat |
43095597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 43095341 - 43095397
Alignment:
| Q |
9 |
agcagagacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
43095341 |
agcagaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa |
43095397 |
T |
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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 44188570 - 44188488
Alignment:
| Q |
180 |
tgtactaaagtggccaatacatttgcagcctattggagaaaaatgggattatagttcacaatcaaaggagcaaatccaagcaa |
262 |
Q |
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| T |
44188570 |
tgtactaaagtggcaaatacatttgcagcctattggagaaaaatgggattatagttcacaatcaaaggagcaaatccaagcaa |
44188488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 6094714 - 6094667
Alignment:
| Q |
180 |
tgtactaaagtggccaatacatttgcagcctattggagaaaaatggga |
227 |
Q |
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| T |
6094714 |
tgtactaaagtggccaatacatttgcaacctattggagaaaaatggga |
6094667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 44162683 - 44162638
Alignment:
| Q |
20 |
gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
44162683 |
gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa |
44162638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 44188803 - 44188758
Alignment:
| Q |
20 |
gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
44188803 |
gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa |
44188758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6094960 - 6094904
Alignment:
| Q |
9 |
agcagagacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
6094960 |
agcagaaacgtgaaaatgaacttgacaagttacaagctgctgtaagtatttgttcaa |
6094904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 32727697 - 32727615
Alignment:
| Q |
180 |
tgtactaaagtggccaatacatttgcagcctattggagaaaaatgggattatagttcacaatcaaaggagcaaatccaagcaa |
262 |
Q |
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| T |
32727697 |
tgtactaaagtggcaaatacatttgcagcctattggagaaaaacgggattatagttcacaatcaaaggagcaaatccaagcaa |
32727615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 32727931 - 32727886
Alignment:
| Q |
20 |
gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
32727931 |
gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa |
32727886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 32718947 - 32718902
Alignment:
| Q |
20 |
gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa |
65 |
Q |
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| T |
32718947 |
gaaaaggaacttgacaagttacaagctgctgtaagtatttattcaa |
32718902 |
T |
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