View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_29 (Length: 251)
Name: NF19085_low_29
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 16406367 - 16406146
Alignment:
| Q |
20 |
gccactggatactataatttaacttagataaagaaagatatcaaccaataaagactgaagctcttccacctccaagtcgtggtcctcccctttaacatct |
119 |
Q |
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| T |
16406367 |
gccactggatactataatttaacttagataaagaaagatatcaaccaataaagactgaagctcttccatctccaagtcgtggtcctcccctttaacatct |
16406268 |
T |
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| Q |
120 |
aatagagaaatatgctctttagccccatgaattcttccttctaaattttgagtatgattctgatgccaagttttcaagcttccattgatcaatttaaatt |
219 |
Q |
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| T |
16406267 |
aatagagaaatatgctctttagccccatgaattcttccttctaaattttgagtatgattctgatgccaagttttcaagcttccattgatcaatttaaatt |
16406168 |
T |
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| Q |
220 |
tttccttcaagacatattcatc |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
16406167 |
tttccttcaagacatattcatc |
16406146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 40306147 - 40306221
Alignment:
| Q |
154 |
ttccttctaaattttgagtatgattctgatgccaagttttcaagcttccattgatcaatttaaatttttccttca |
228 |
Q |
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| T |
40306147 |
ttccttttaatttttgagtgtgattttgatgccaagttttcaggcatcttttgattaattttaatttttccttca |
40306221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 25151217 - 25151189
Alignment:
| Q |
159 |
tctaaattttgagtatgattctgatgcca |
187 |
Q |
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| T |
25151217 |
tctaaattttgagtatgattctgatgcca |
25151189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 13092696 - 13092733
Alignment:
| Q |
165 |
ttttgagtatgattctgatgccaagttttcaagcttcc |
202 |
Q |
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| T |
13092696 |
ttttgagtatgattctgatgccacgtgttcaagcttcc |
13092733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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