View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_30 (Length: 250)

Name: NF19085_low_30
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_30
NF19085_low_30
[»] chr5 (19 HSPs)
chr5 (1-231)||(39399640-39399870)
chr5 (5-231)||(39168643-39168857)
chr5 (1-125)||(38987438-38987562)
chr5 (1-125)||(39726151-39726275)
chr5 (1-125)||(39879553-39879677)
chr5 (1-125)||(40418028-40418152)
chr5 (1-112)||(3299236-3299347)
chr5 (1-112)||(3392129-3392240)
chr5 (1-112)||(1849707-1849818)
chr5 (1-96)||(1163964-1164059)
chr5 (162-231)||(40418225-40418294)
chr5 (162-226)||(3299475-3299539)
chr5 (162-226)||(3392368-3392432)
chr5 (170-231)||(38987655-38987716)
chr5 (170-231)||(39726368-39726429)
chr5 (170-231)||(39879764-39879825)
chr5 (34-120)||(40596400-40596486)
chr5 (162-226)||(1849907-1849971)
chr5 (162-226)||(1163765-1163829)
[»] chr4 (2 HSPs)
chr4 (5-111)||(25912530-25912636)
chr4 (170-231)||(25912365-25912426)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39399640 - 39399870
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399640 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 39399739  T
Q  101 tattttgttctcaatattgtcctccaagaggatggggaggagattgctgctgattcttctactgctgctaaaaaataccgtttagctgatgccgtggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399740 tattttgttctcaatattgtcctccaagaggatggggaggagattgctgctgattcttctactgctgctaaaaaataccgtttagctgatgccgtggttg 39399839  T
Q  201 ctcgtgtggaaaattttggaaataatgacac 231  Q
    |||||||||||||||||||||||||||||||    
T  39399840 ctcgtgtggaaaattttggaaataatgacac 39399870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 39168643 - 39168857
Alignment:
Q  5 cttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaatatt 104  Q
    |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||     
T  39168643 cttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcacccttcacgcattcattcactaggactcagttagtgaaatatg 39168742  T
Q  105 ttgttctcaatattgtcctccaagaggatggggaggagattgctgctgattcttctactgctgctaaaaaataccgtttagctgatgccgtggttgctcg 204  Q
    |||||||  ||||||||||||| |||||   |||||||||||||||||         ||||||| |||||||| || |||||||||||||||||||||||    
T  39168743 ttgttcttgatattgtcctccaggagga---ggaggagattgctgctg---------ctgctgccaaaaaatatcggttagctgatgccgtggttgctcg 39168830  T
Q  205 tgtggaaaattttggaaataatgacac 231  Q
    ||||||| |||||||||||||||||||    
T  39168831 tgtggaagattttggaaataatgacac 39168857  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 38987438 - 38987562
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || |||| | ||| |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||| ||    
T  38987438 tttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaa 38987537  T
Q  101 tattttgttctcaatattgtcctcc 125  Q
    ||| |||||||| ||||||||||||    
T  38987538 tatgttgttctcgatattgtcctcc 38987562  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39726151 - 39726275
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || |||| | ||| |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||| ||    
T  39726151 tttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaa 39726250  T
Q  101 tattttgttctcaatattgtcctcc 125  Q
    ||| |||||||| ||||||||||||    
T  39726251 tatgttgttctcgatattgtcctcc 39726275  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39879553 - 39879677
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || |||| | ||| |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||| ||    
T  39879553 tttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaa 39879652  T
Q  101 tattttgttctcaatattgtcctcc 125  Q
    ||| |||||||| ||||||||||||    
T  39879653 tatgttgttctcgatattgtcctcc 39879677  T

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Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 40418028 - 40418152
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || |||| | ||| |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||| ||    
T  40418028 tttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaa 40418127  T
Q  101 tattttgttctcaatattgtcctcc 125  Q
    ||| |||||||| ||| ||||||||    
T  40418128 tatgttgttctcgatactgtcctcc 40418152  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3299236 - 3299347
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || ||||||||||| ||| |||||| ||||||| ||||||| |||||||  |||| ||||||||||  ||    
T  3299236 tttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaa 3299335  T
Q  101 tattttgttctc 112  Q
    ||| ||||||||    
T  3299336 tatgttgttctc 3299347  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3392129 - 3392240
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaa 100  Q
    |||||||||||||||||||||||||   | || ||||||||||| ||| |||||| ||||||| ||||||| |||||||  |||| ||||||||||  ||    
T  3392129 tttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaa 3392228  T
Q  101 tattttgttctc 112  Q
    ||| ||||||||    
T  3392229 tatgttgttctc 3392240  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1849707 - 1849818
Alignment:
Q  1 tttgcttgatccatttaccttgacc-gctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaa 99  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||  |||||| ||||||| ||||||| |||||||  ||||  |||||||||  |    
T  1849707 tttgcttgatccatttaccttgacccgctgtttc-ttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtgga 1849805  T
Q  100 atattttgttctc 112  Q
    |||| ||||||||    
T  1849806 atatgttgttctc 1849818  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1164059 - 1163964
Alignment:
Q  1 tttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagt 96  Q
    |||||||||||||||||||||||||   | || ||||||||||| ||| |||||| ||||||| ||||||| |||||||  |||| ||||||||||    
T  1164059 tttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagt 1163964  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 40418225 - 40418294
Alignment:
Q  162 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacac 231  Q
    ||||||| ||||||||  ||||||||||||| ||||||||||||||| || || ||||||||||||||||    
T  40418225 ctgctgccaaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatgacac 40418294  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 3299475 - 3299539
Alignment:
Q  162 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataat 226  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||| || || |||||||||||    
T  3299475 ctgctgccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataat 3299539  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 3392368 - 3392432
Alignment:
Q  162 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataat 226  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||| || || |||||||||||    
T  3392368 ctgctgccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataat 3392432  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 38987655 - 38987716
Alignment:
Q  170 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacac 231  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||  |||||||||||||||    
T  38987655 aaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacac 38987716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 39726368 - 39726429
Alignment:
Q  170 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacac 231  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||  |||||||||||||||    
T  39726368 aaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacac 39726429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 39879764 - 39879825
Alignment:
Q  170 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacac 231  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||  |||||||||||||||    
T  39879764 aaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacac 39879825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 40596400 - 40596486
Alignment:
Q  34 cttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaatattttgttctcaatattgt 120  Q
    |||||| | |||||| ||||||||||||| |||||||| |||| ||| ||||| |||||||||  |||||| ||| ||| |||||||    
T  40596400 cttaaatgttgatcagtactggaatgcacttttcacgccttcactcactaggagtcagttagtggaatattctgtgctcgatattgt 40596486  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 1849907 - 1849971
Alignment:
Q  162 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataat 226  Q
    ||||||| |||||||| ||||||||| ||||| | |||||||||||| || || |||||||||||    
T  1849907 ctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataat 1849971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 1163829 - 1163765
Alignment:
Q  162 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataat 226  Q
    ||||||| |||||||| ||||||||| ||||| | |||||||||||  || || |||||||||||    
T  1163829 ctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat 1163765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 25912636 - 25912530
Alignment:
Q  5 cttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtcaaatatt 104  Q
    ||||||||||||||||||||   || || ||| ||||||||||| |||||||||||||| ||||||| || ||||| |||| ||||||||||  |||||     
T  25912636 cttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatata 25912537  T
Q  105 ttgttct 111  Q
    |||||||    
T  25912536 ttgttct 25912530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 25912426 - 25912365
Alignment:
Q  170 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacac 231  Q
    |||||||| |||||||||||||  ||||||||||||||| || || ||||||||||||||||    
T  25912426 aaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatgacac 25912365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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