View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19085_low_35 (Length: 232)

Name: NF19085_low_35
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19085_low_35
NF19085_low_35
[»] chr4 (2 HSPs)
chr4 (122-215)||(43738121-43738214)
chr4 (173-214)||(47523880-47523921)
[»] scaffold1037 (1 HSPs)
scaffold1037 (97-215)||(2525-2643)
[»] scaffold1031 (1 HSPs)
scaffold1031 (97-215)||(2644-2762)
[»] chr8 (5 HSPs)
chr8 (97-215)||(216701-216819)
chr8 (97-215)||(693261-693379)
chr8 (97-215)||(697470-697588)
chr8 (97-215)||(730324-730442)
chr8 (97-215)||(854219-854337)
[»] chr5 (1 HSPs)
chr5 (126-215)||(4554062-4554152)
[»] chr2 (1 HSPs)
chr2 (173-214)||(36476100-36476141)
[»] chr1 (1 HSPs)
chr1 (126-215)||(17494718-17494807)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 43738121 - 43738214
Alignment:
Q  122 cttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaag 215  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43738121 cttcaaatacagtgaagcttgttgtggtggttttccagatacgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaag 43738214  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 47523880 - 47523921
Alignment:
Q  173 ttgttgttgtgatgttccagatctcaacttttaggaagaaaa 214  Q
    |||||||||||||||| ||||||| || ||||||||||||||    
T  47523880 ttgttgttgtgatgtttcagatctaaaattttaggaagaaaa 47523921  T

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Target: scaffold1037 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 2525 - 2643
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||    
T  2525 ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct 2624  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  2625 caacttttaggaagaaaag 2643  T

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Target: scaffold1031 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 2644 - 2762
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||    
T  2644 ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct 2743  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  2744 caacttttaggaagaaaag 2762  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 216819 - 216701
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  216819 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 216720  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  216719 caacttttaggaagaaaag 216701  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 693379 - 693261
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  693379 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 693280  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  693279 caacttttaggaagaaaag 693261  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 697588 - 697470
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  697588 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 697489  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  697488 caacttttaggaagaaaag 697470  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 730442 - 730324
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  730442 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 730343  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  730342 caacttttaggaagaaaag 730324  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 854337 - 854219
Alignment:
Q  97 ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct 196  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  854337 ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct 854238  T
Q  197 caacttttaggaagaaaag 215  Q
    |||||||||||||||||||    
T  854237 caacttttaggaagaaaag 854219  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 4554152 - 4554062
Alignment:
Q  126 aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaag 215  Q
    ||||||| ||||| |||||||||| ||||| || || ||||||| || |||||||| ||||||||||||||| | ||| ||||||||||||    
T  4554152 aaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttcttgttgttttgatgttccagatctgaccttgtaggaagaaaag 4554062  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 36476141 - 36476100
Alignment:
Q  173 ttgttgttgtgatgttccagatctcaacttttaggaagaaaa 214  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  36476141 ttgttgttgtgatgttccagatctaaaattttaggaagaaaa 36476100  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 17494807 - 17494718
Alignment:
Q  126 aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaag 215  Q
    ||||||| |||||||||||||| |||||||||| || | ||| |||| ||||| | ||||| | ||| ||||||||| |||||||||||||    
T  17494807 aaatacaatgaagcttgttgtgatggttttccaaatccaaatctattcttgttttggtgat-taccaaatctcaactgttaggaagaaaag 17494718  T

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