View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19085_low_4 (Length: 475)
Name: NF19085_low_4
Description: NF19085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19085_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 44449511 - 44449173
Alignment:
| Q |
8 |
atcaatcacactaatttttcataatatagcatgttatgataccgtgtgta-----taaaccagtttttctcccattaaattcttaaaagagtaaaacaga |
102 |
Q |
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| T |
44449511 |
atcaatcacactaatttttcataatatagcatgttatgattccgtgtgtaatgtataaaccagtttttctcccattaaattcttaaaagagtaaaaggga |
44449412 |
T |
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| Q |
103 |
tatacttgtaatttagtgccccaaataaagatccataatgtagacatcagaaataaaacaaggaacatgagcagaggattcgtggtgtgatagaattaag |
202 |
Q |
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| T |
44449411 |
tatacttgtaatttagtaccccaaataaagattcataatgtagacatcagaaataaaacaaggaacatgagcagaggattcgtggtgtgatagaattaag |
44449312 |
T |
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| Q |
203 |
taaccatattttgcagaggcttcggtgtactagaataatcagcaatattttgcgaaggctgacatgatgaattattatgccactgtcttaaatggtcaaa |
302 |
Q |
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| T |
44449311 |
taaccatattttgcagaggattcggtgtactagaataatcagcaatattatgcaaaggctgacatgatggattattatgccaccgtcttaaatggtcaaa |
44449212 |
T |
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| Q |
303 |
ttggctaccaaggcctagtaaagattgtaacaagagcaa |
341 |
Q |
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| T |
44449211 |
ttggctaccaaggccaagtaaagattgtaacaagagcaa |
44449173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 40486645 - 40486548
Alignment:
| Q |
369 |
ttcccacgttaggaatattacttttactcctatgatttctaattgggtttggatcgatgcttttaccttaaagtaggtacaaatattgttggcctttg |
466 |
Q |
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| T |
40486645 |
ttcccacgttaggagtattacttttactcctatgatttctaattgggtttggatcgatgcttttaccttaaagtaggtacaaatattgttggcctttg |
40486548 |
T |
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