View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19086_high_3 (Length: 366)
Name: NF19086_high_3
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19086_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 2232064 - 2231724
Alignment:
| Q |
9 |
agcagagaatatgtagaaagttggggccaatattctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatct |
108 |
Q |
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| T |
2232064 |
agcaaagaatatgtagaaagttggggccaatattctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatct |
2231965 |
T |
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| Q |
109 |
tcagttattcctctaaatggtcccatagctgaatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcacca |
208 |
Q |
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| T |
2231964 |
tcagttattcctctaaatggtcccatagctgaatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcacca |
2231865 |
T |
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| Q |
209 |
tatattatgaaaatgtataatggaaataagacaaaaaataca-nnnnnnnagataatccacaagcatccctctatattatgttcgaggatttctcagaca |
307 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231864 |
tatattatgaaaacgtataatggaaatgagacaaaaaatacattttttttagataatccacaagcatccctctatattatgttcgaggatttctcagaca |
2231765 |
T |
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| Q |
308 |
ctaaatgtggacatctcttccatttgaaccggtattatgtt |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231764 |
ctaaatgtggacatctcttccatttgaaccggtattatgtt |
2231724 |
T |
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