View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19086_low_1 (Length: 736)
Name: NF19086_low_1
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19086_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 534; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 5 - 720
Target Start/End: Complemental strand, 32601394 - 32600675
Alignment:
| Q |
5 |
ataagtgttagagaaaggtatttaatctattttcttcaaatgaaaataggaatatcaacatacttaattagtattttgtaaaaaatagtacttactagtt |
104 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32601394 |
ataagcgttagagaaaggtatttaatttattttcttcaaattaaaataggtatatcaacatacttaat----attttgtaaaaaatagtacttactagtt |
32601299 |
T |
|
| Q |
105 |
tcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggattgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32601298 |
tcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggattgg |
32601199 |
T |
|
| Q |
205 |
tgataatgtttctcatacataattgatatttcattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggccaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32601198 |
tgataatgtttctcatacataattgatatttcattttatatttcattataatttcttttttgaaacataggggatgggaagatcctgctacatgggccaa |
32601099 |
T |
|
| Q |
305 |
aagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaatatgataactcacttattttcttc-----------a |
393 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
32601098 |
aagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgataactcacttattttcttcattttcttcata |
32600999 |
T |
|
| Q |
394 |
nnnnnnnnnncattttcttcgagtaaacttaatattataactggaatagtnnnnnnnntcaattattttcttcattttcttatattatgaccaactaact |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32600998 |
ttttttttttcattttcttcgagtaaacttaatattataactggaatagtaaaaaaaatcaattattttcttcattttcttatattatgaccaactaact |
32600899 |
T |
|
| Q |
494 |
ttattccatccc-tagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaacctcact |
592 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32600898 |
ttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaacctcact |
32600799 |
T |
|
| Q |
593 |
agtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaatttctcatatgtgccattaatgttttgatattaattagatc |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||| |
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|
| T |
32600798 |
agtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttggat----attagatc |
32600703 |
T |
|
| Q |
693 |
ctgatatgctcgaagttggaaatggagg |
720 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
32600702 |
ctgatatgcttgaagttggaaatggagg |
32600675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 381
Target Start/End: Complemental strand, 32590925 - 32590551
Alignment:
| Q |
5 |
ataagtgttagagaaaggtatttaatctattttcttcaaatgaaaataggaatatcaacatacttaattagtattttgtaaaaaa--tagtacttactag |
102 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||||| ||||| |
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|
| T |
32590925 |
ataagcgttagagaaaggtatttaatttatgttcttcaaatgcaaataggtatatctacatacttaat----attttgtaaaaaaaatagtactcactag |
32590830 |
T |
|
| Q |
103 |
tttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggatt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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|
| T |
32590829 |
tttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctgtgtgtgaatggtgagttgaatt |
32590730 |
T |
|
| Q |
203 |
ggtgataatgtttctcatacataattgatatttcattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
32590729 |
agtgataatgtttctcatacataattgatatttcattttctattttattatacttgcttttttgaaacataggggaaaggaagatccagcaacatgggcc |
32590630 |
T |
|
| Q |
303 |
aaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaatatgataactcac |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
32590629 |
aaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcac |
32590551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 453 - 720
Target Start/End: Complemental strand, 32590489 - 32590227
Alignment:
| Q |
453 |
caattattttcttcattttcttatattatgaccaactaactttattccatccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatg |
552 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
32590489 |
caattattttcttcattttcctatattatgaccaactaactttattcc-tccctaggatgacttctataatagatgtaaacgataaatgggcatcttatg |
32590391 |
T |
|
| Q |
553 |
ctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaat |
652 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32590390 |
ctggacctggaggatggaatggtaattaattaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaat |
32590291 |
T |
|
| Q |
653 |
ttctcatatgtgccattaatgttttgatattaattagatcctgatatgctcgaagttggaaatggagg |
720 |
Q |
| |
|
| ||| |||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32590290 |
tcctcgtatgtgtcattaatgtttggat----attagatcctgatatgcttgaagttggaaatggagg |
32590227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 24883186 - 24883258
Alignment:
| Q |
123 |
aggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgag |
195 |
Q |
| |
|
||||| |||| |||| ||||||| ||| || ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
24883186 |
aggtacccacgaatgggtgaagctttagtacaatctggaaggccaatcttctactctttgtgtgaatggtgag |
24883258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 24883555 - 24883595
Alignment:
| Q |
537 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
577 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24883555 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
306 |
agtgtgggaaatagttggagaacaactggagatattgaagataactggaataggt |
360 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||| |||||| |
|
|
| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 4e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 507 - 720
Target Start/End: Complemental strand, 34578196 - 34577987
Alignment:
| Q |
507 |
agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgca |
606 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34578196 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaacctcactagtaatgttatgca |
34578097 |
T |
|
| Q |
607 |
tgttaaacttaagatcattacaagtatatcaaactccaatattaatttctcatatgtgccattaatgttttgatattaattagatcctgatatgctcgaa |
706 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||||||||||||| ||| |
|
|
| T |
34578096 |
tgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttggat----attagatcctgatatgcttgaa |
34578001 |
T |
|
| Q |
707 |
gttggaaatggagg |
720 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34578000 |
gttggaaatggagg |
34577987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 118 - 360
Target Start/End: Complemental strand, 34578633 - 34578391
Alignment:
| Q |
118 |
aaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggattggtgataatgtttct |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| || |||| | ||||||| |
|
|
| T |
34578633 |
aaattaggtatccaccaatgagtgaagctttattaaactccggaaggccaatcttcttctctatgtgtgaatggtgagttgaattgatcgcggtgtttct |
34578534 |
T |
|
| Q |
218 |
catacataattgatatttcattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggccaaaagtgtgggaaat |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||| || | ||||||| | ||| ||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
34578533 |
catacataaacaatatttcattttctatttctcacttaattcttttctaaaattcaggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaat |
34578434 |
T |
|
| Q |
318 |
agttggagaacaactggagatattgaagataactggaataggt |
360 |
Q |
| |
|
||||||||||| || || ||||| |||||||| ||||| |||| |
|
|
| T |
34578433 |
agttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 123 - 362
Target Start/End: Complemental strand, 34594332 - 34594089
Alignment:
| Q |
123 |
aggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctgga-ttggtgataatgtttctcata |
221 |
Q |
| |
|
||||| || |||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||| || | || || |||||||||||| |
|
|
| T |
34594332 |
aggtacccgccaatgagtgaagccttaatgaaatctggaaggtcaatcttcttctcaatgtgtgaatggtgagttgaaattaaatatgatgtttctcata |
34594233 |
T |
|
| Q |
222 |
cataattgatattt---cattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggccaaaagtgtgggaaata |
318 |
Q |
| |
|
||| | | ||||| || |||||| | | || | |||| || ||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
34594232 |
catgaataatattattccaatttctactagcctttacataattttgtggaacataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaata |
34594133 |
T |
|
| Q |
319 |
gttggagaacaactggagatattgaagataactggaataggtaa |
362 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
34594132 |
gttggagaacaacaggtgatattgaagataattggaataggtaa |
34594089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 35124351 - 35124249
Alignment:
| Q |
93 |
tacttactagtttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggt |
192 |
Q |
| |
|
|||||| |||||||||| || ||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35124351 |
tacttattagtttcataaattttgtaaattaggtacccaccaatgagtgaagccttgttaaactctggaagaccaatcttcttctctatgtgtgaatggt |
35124252 |
T |
|
| Q |
193 |
gag |
195 |
Q |
| |
|
||| |
|
|
| T |
35124251 |
gag |
35124249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 586
Target Start/End: Complemental strand, 34593991 - 34593907
Alignment:
| Q |
502 |
tccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaac |
586 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34593991 |
tccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac |
34593907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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