View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19086_low_12 (Length: 210)
Name: NF19086_low_12
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19086_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 1045029 - 1044903
Alignment:
| Q |
17 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctctttattcttggtgaagcttacttc |
116 |
Q |
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| T |
1045029 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctgtttattcctggtgaagcttacttc |
1044930 |
T |
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| Q |
117 |
ctagtaacctaagtcagcaaagccaaa |
143 |
Q |
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| T |
1044929 |
ctagtaacctaagtcagcaaagccaaa |
1044903 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 1036790 - 1036719
Alignment:
| Q |
139 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
1036790 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaagg |
1036719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 55907854 - 55907783
Alignment:
| Q |
139 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagg |
210 |
Q |
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| T |
55907854 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactactgaagtcaagttcttcaaggaaagg |
55907783 |
T |
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