View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19086_low_2 (Length: 467)

Name: NF19086_low_2
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19086_low_2
NF19086_low_2
[»] chr3 (15 HSPs)
chr3 (227-457)||(49134126-49134354)
chr3 (38-228)||(35613021-35613212)
chr3 (39-228)||(50834007-50834197)
chr3 (39-228)||(50841656-50841846)
chr3 (42-226)||(25313366-25313551)
chr3 (38-228)||(22515639-22515830)
chr3 (38-228)||(46320434-46320625)
chr3 (42-228)||(54747991-54748177)
chr3 (42-228)||(25095993-25096179)
chr3 (41-228)||(23026291-23026479)
chr3 (42-228)||(26848166-26848352)
chr3 (41-161)||(9663911-9664029)
chr3 (41-161)||(48905639-48905760)
chr3 (42-212)||(20922780-20922951)
chr3 (41-226)||(49794962-49795149)
[»] chr6 (3 HSPs)
chr6 (38-228)||(1365645-1365836)
chr6 (38-228)||(24338014-24338205)
chr6 (39-221)||(7243419-7243602)
[»] chr2 (18 HSPs)
chr2 (38-228)||(39778654-39778845)
chr2 (44-228)||(19926795-19926978)
chr2 (41-228)||(10728298-10728486)
chr2 (38-220)||(25186947-25187129)
chr2 (45-223)||(36191585-36191763)
chr2 (38-221)||(10700226-10700410)
chr2 (42-228)||(11964151-11964337)
chr2 (41-228)||(41435614-41435801)
chr2 (42-228)||(10448719-10448905)
chr2 (44-228)||(22066384-22066568)
chr2 (45-228)||(21345090-21345270)
chr2 (41-161)||(7105620-7105741)
chr2 (41-181)||(28831005-28831146)
chr2 (39-223)||(42993809-42993994)
chr2 (41-228)||(13693535-13693722)
chr2 (99-228)||(41462666-41462795)
chr2 (38-118)||(16621977-16622056)
chr2 (39-115)||(45695638-45695714)
[»] chr1 (23 HSPs)
chr1 (39-228)||(16130517-16130707)
chr1 (39-228)||(16129967-16130157)
chr1 (42-228)||(40988075-40988261)
chr1 (38-228)||(27654606-27654795)
chr1 (38-225)||(9411731-9411919)
chr1 (45-228)||(1553717-1553900)
chr1 (45-229)||(27332948-27333132)
chr1 (41-228)||(34546650-34546835)
chr1 (41-228)||(5800442-5800629)
chr1 (38-228)||(4813754-4813945)
chr1 (41-177)||(36834287-36834419)
chr1 (41-229)||(23933323-23933513)
chr1 (46-214)||(35050315-35050483)
chr1 (38-145)||(27846418-27846526)
chr1 (42-228)||(30222693-30222879)
chr1 (38-228)||(45192575-45192765)
chr1 (41-142)||(13879060-13879161)
chr1 (38-175)||(11907931-11908067)
chr1 (105-181)||(35121218-35121293)
chr1 (190-229)||(13879197-13879236)
chr1 (41-83)||(35121293-35121335)
chr1 (42-75)||(35428458-35428491)
chr1 (89-133)||(26961170-26961214)
[»] chr4 (11 HSPs)
chr4 (41-228)||(27627753-27627939)
chr4 (41-228)||(26877163-26877351)
chr4 (38-228)||(782793-782984)
chr4 (38-228)||(36187319-36187510)
chr4 (41-228)||(30537636-30537823)
chr4 (42-228)||(43034136-43034322)
chr4 (44-228)||(50150325-50150509)
chr4 (41-228)||(25934341-25934527)
chr4 (41-228)||(3067729-3067915)
chr4 (41-158)||(33313300-33313418)
chr4 (41-137)||(56551480-56551573)
[»] chr8 (10 HSPs)
chr8 (38-228)||(32305708-32305899)
chr8 (39-221)||(35634794-35634977)
chr8 (42-228)||(13882086-13882271)
chr8 (42-229)||(8669734-8669920)
chr8 (41-223)||(8106899-8107081)
chr8 (45-219)||(29226286-29226459)
chr8 (42-177)||(42569953-42570089)
chr8 (42-222)||(37533773-37533953)
chr8 (56-152)||(36741715-36741815)
chr8 (38-179)||(17855397-17855539)
[»] chr7 (9 HSPs)
chr7 (44-228)||(48394171-48394354)
chr7 (38-181)||(23319978-23320122)
chr7 (42-228)||(24989714-24989900)
chr7 (38-228)||(48390322-48390513)
chr7 (41-180)||(18674552-18674691)
chr7 (52-228)||(8417659-8417835)
chr7 (41-161)||(7568184-7568305)
chr7 (42-161)||(41851021-41851141)
chr7 (42-161)||(45062522-45062642)
[»] scaffold0067 (1 HSPs)
scaffold0067 (42-228)||(6703-6890)
[»] chr5 (9 HSPs)
chr5 (38-228)||(24868467-24868658)
chr5 (39-228)||(40385238-40385430)
chr5 (45-228)||(21262907-21263090)
chr5 (53-228)||(33314329-33314504)
chr5 (39-225)||(3097554-3097741)
chr5 (41-226)||(41174666-41174851)
chr5 (42-144)||(4237936-4238039)
chr5 (53-216)||(2934905-2935070)
chr5 (38-79)||(4238147-4238188)
[»] scaffold0057 (2 HSPs)
scaffold0057 (38-175)||(30463-30601)
scaffold0057 (45-175)||(30839-30960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (99-228)||(258380-258509)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 227 - 457
Target Start/End: Complemental strand, 49134354 - 49134126
Alignment:
Q  227 taagatatatagaggcactattatttcatttttcctaacttgtttaatcttagcccttggggatgagctcagcacagcgcgctgctgcatgctgcatgct 326  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  49134354 taagatatatagaggcactattatttcatttatcctaacttgtttaatcttggcccttggggatgagcacagcacagcgcgctgctgcatgctgcatgct 49134255  T
Q  327 accgactgaagtcaagtgggccaaagcaaaggccgtagattctttgtctctcttctcttccttttgcgcacccaacccaacaaaatcccctaatgttaag 426  Q
     ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49134254 gccgactgaagtcaagtgggccaaagcaaaggccgtagattctttgt--ctcttctcttccttttgcgcacccaacccaacaaaatcccctaatgttaag 49134157  T
Q  427 gggattgtaatctagtagtaacttccttcat 457  Q
    |||||||||||||||||||||||||||||||    
T  49134156 gggattgtaatctagtagtaacttccttcat 49134126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 35613021 - 35613212
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  35613021 ttccatgaatacccctaaattaattactctttattccaccaacttatttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 35613119  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  35613120 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 35613212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 50834197 - 50834007
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  50834197 tccatgaatacccttaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataagtaagggcacaaatgaaatttagct 50834099  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||        | ||||||||||| |||||||||||||||||||||||||    
T  50834098 tcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 50841656 - 50841846
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  50841656 tccatgaatacccttaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataagtaagggcacaaatgaaatttagct 50841754  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||        | ||||||||||| |||||||||||||||||||||||||    
T  50841755 tcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 25313551 - 25313366
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25313551 atgaatacccctaaattaattattctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 25313453  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggag 226  Q
    |||||||||||||||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||    
T  25313452 aacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggagggag 25313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 22515830 - 22515639
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  22515830 ttccataaatattcttaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 22515732  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||        ||||| ||||||||||||||||||||| |||||||||||    
T  22515731 ttcagacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaagaatttcagttttgtttctaataaaaaggatcggagggagta 22515639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 46320625 - 46320434
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||| || |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||| |    
T  46320625 ttccattaacacccctaaattaattactctttatttcaccaacttacttac-ttttaatattctctctcataataaataagggtacaaatgaaatttaac 46320527  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  46320526 ttcaaacatacttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 46320434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 54748177 - 54747991
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  54748177 atgaatacccttaaattaattactctttattccatcaatttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 54748079  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  54748078 aacatacttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 54747991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 25095993 - 25096179
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  25095993 atgaatacccttaaattaattactctttattccatcaatttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 25096091  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||| ||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  25096092 aacatacttgaaatttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 25096179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 23026291 - 23026479
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||| ||||    
T  23026291 catgaatgcccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttaacttc 23026389  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||| ||  |||| |||||||||||||| ||||        | |||||||||||||||||||||||||||||||| ||||    
T  23026390 aaacatacttgaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 23026479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 26848166 - 26848352
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||||||||||||| ||||||||||||||    
T  26848166 atgaacacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaaagaaatttagcttca 26848264  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||| ||||   |||||||||||| ||||        | |||||||||||| ||||||||||||||||||||||||    
T  26848265 aacatacttgaaacttgatcaa-tcttcttataaaaatgaccaaaaaaattctcacttttgtttataataaaaaggaccggagggagta 26848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 9663911 - 9664029
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaa 140  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9663911 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctcataataaataagggcacaaatgaaatttaccttcaa 9664009  T
Q  141 acatacttgaaacttggtcaa 161  Q
    |||| ||||||||||||||||    
T  9664010 acat-cttgaaacttggtcaa 9664029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 48905639 - 48905760
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  48905639 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttaccttc 48905737  T
Q  139 aaacatacttgaaacttggtcaa 161  Q
    |||||||||||||||||||||||    
T  48905738 aaacatacttgaaacttggtcaa 48905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 20922780 - 20922951
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||| || ||||||||||| | |||||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  20922780 atgaatatccctaaattaattattttttattccaccaacttacttac-ttttaatattctctctcataataaataagagcacaaatgaaatttagcttca 20922878  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaa 212  Q
    |  ||||||||||||||||||| ||||||||||||||| |||        |||||||||||||||||||||||    
T  20922879 agaatacttgaaacttggtcaatatttcttataaaaagaaccaaaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 49794962 - 49795149
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| | |||||||||||||||||||    
T  49794962 catgaataccccttaattaattactctttattccaccaacttacttac-ttttaatattttctctcataataaataagagtacaaatgaaatttagcttc 49795060  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttc--acttttgtttctaataaaaaggaccggagggag 226  Q
    || ||||||||||||||| |||| ||||||||||||||| |           |||  |||||||||||||||||||||||||||||||||    
T  49795061 aa-catacttgaaacttgatcaatatttcttataaaaagaaaaaaaaaaagattctcacttttgtttctaataaaaaggaccggagggag 49795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 1365836 - 1365645
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  1365836 ttccatgaatacccttaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 1365738  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  1365737 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaacaaaattctcacttttgtttctaataaaaaggaccggagggagta 1365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 24338014 - 24338205
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  24338014 ttccatgaataaccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 24338112  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||        | |||||||||||||||||||||||||||||||||||||    
T  24338113 ttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 24338205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 7243419 - 7243602
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||| ||    
T  7243419 tccatgaatacccctaaattaattattctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttaact 7243517  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccgga 221  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||        | |||||||||||| |||||||||||||||||    
T  7243518 tcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaagttctcacttttgtttataataaaaaggaccgga 7243602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 39778654 - 39778845
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  39778654 ttccatgaatacccttaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 39778752  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||    
T  39778753 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaagaccggagggagta 39778845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 19926795 - 19926978
Alignment:
Q  44 gaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaaaca 143  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19926795 gaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctcataataaataagggcacaaatgaaatttagtttcaaaca 19926893  T
Q  144 tacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||| |||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  19926894 tacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggaccggagggagta 19926978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 10728298 - 10728486
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10728298 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcataaatgaaatttagcttc 10728396  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||| ||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  10728397 aaacatacttgaaactttgtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 10728486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 25187129 - 25186947
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  25187129 ttccatgaatatccttaaattaattactcttaattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 25187031  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccgg 220  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||        |||||||||||||||||||||||||||||||    
T  25187030 ttcagacatacttgaaacttggtcaatatttcttataaaaatgacc-aaaaaaatttcacttttgtttctaataaaaaggaccgg 25186947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 36191585 - 36191763
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  36191585 aatacccctaaattaattactctttattccac-aacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaac 36191682  T
Q  143 atacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagg 223  Q
    ||||||||||||| ||||| |||||||||||||||||||        | ||||||||||||||||||||||||||||||||    
T  36191683 atacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 10700226 - 10700410
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||| |||||||||||||||||||||||    
T  10700226 ttccatgaatacccctaaattaattactctttattccaccaacttatttac-ttttaatattctctctcataataagtaagggcacaaatgaaatttagc 10700324  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccgga 221  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||         | ||||||||||||||||||||||||| ||||    
T  10700325 ttcagacatacttgaaacttggtcaatatttcttataaaaaagactaaaaaaattctcacttttgtttctaataaaaaggatcgga 10700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 11964337 - 11964151
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  11964337 atgaatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 11964239  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| |||||||||| ||||   |||||||||||||||||        | |||||||||||||||||| ||||||||||||||||||    
T  11964238 aacatatttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaatagaaaggaccggagggagta 11964151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 41435614 - 41435801
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttc 138  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  41435614 catgaatacccttaaattaattactctttatttcatcaacttatttac-ttttaatattctatctcataatcaataagggcacaaatgaaatttagcttc 41435712  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||| ||||   || ||||||||||||||        | ||||||||||||||||||||||||||||||| |||||    
T  41435713 aaacatacttgaaacttgatcaa-tcttattataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagcgagta 41435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 10448905 - 10448719
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||  ||||| |||||| |||||||||||||||| |||||    
T  10448905 atgaatacccttaaattaattactatttattccatcaacttacttac-ttttaatattctctctcataatcaataagagcacaaatgaaatttaacttca 10448807  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||| ||||   |||||||||| ||||||        | |||||||||||||||||||||||||||||||||||||    
T  10448806 aacatacttgaaacttgatcaa-tcttcttataaagaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 10448719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 22066384 - 22066568
Alignment:
Q  44 gaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaa 141  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||| |||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaa 22066482  T
Q  142 catacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||| ||||   |||||||||||||||||        | ||||||||||||||||||||||||| |||||||||||    
T  22066483 catacttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggatcggagggagta 22066568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 21345090 - 21345270
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaaacat 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||  ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  21345090 aatacccttaaattaattactctttattccatcaacttacttac-ttttaattctctctcacaatcaataaggacacaaatgaaatttagcttcaaacat 21345188  T
Q  145 acttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||| ||||    
T  21345189 acttgaaacttgatcaa-tcttcttataaaaaggacc-aaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 21345270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 7105741 - 7105620
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  7105741 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattttctctcataataaataagggcacaaatgaaatttaccttc 7105643  T
Q  139 aaacatacttgaaacttggtcaa 161  Q
    || ||||||||||||||||||||    
T  7105642 aagcatacttgaaacttggtcaa 7105620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 28831146 - 28831005
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  28831146 catgaatacccctaaattaattactctttattgcaccaatttacttac-ttttaatattttctctcataataaataaggacacaaatgaaatttaacttc 28831048  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggacc 181  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  28831047 aaacatacttaaaatttggtcaatatttcttataaaaaggacc 28831005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 42993809 - 42993994
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagct 136  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||| |||||||  |||| |||||||||||||||||||||||| ||    
T  42993809 tccatgaatacccctaaattaattcctctttattccactaacttatttac-ttttaattttctctctcataacaaataagggcacaaatgaaatttatct 42993907  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntt-tcacttttgtttctaataaaaaggaccggagg 223  Q
    |||||||||||||||| ||||||||   |||||||||||||||||        || ||||||||||||||||||||||||||||||||    
T  42993908 tcaaacatacttgaaatttggtcaa-tcttcttataaaaaggaccaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 13693535 - 13693722
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||| |||||  ||||||||||||||| || |||||||||||| |||     
T  13693535 catgaatacccctaaattaattcctctttattccactaacttatttac-ttttaattttctctctcataataaataaggacagaaatgaaatttatcttt 13693633  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||   |||||||||||||||||        | ||||||||||||||||||||||||||||||| |||||    
T  13693634 aaacatacttgaaacttggtcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 13693722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 41462795 - 41462666
Alignment:
Q  99 tctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttt 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||        | |||||||    
T  41462795 tctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttt 41462696  T
Q  199 tgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||| ||||||||||    
T  41462695 tgtttctaataaaaaggactggagggagta 41462666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 16621977 - 16622056
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataaggg 118  Q
    |||||||||| ||| || |||||||||||||  ||| |||||||||||||  |||||||||||||||||||||||||||||    
T  16621977 ttccatgaatgcccctatattaattactcttatttctaccaacttacttat-ttttaatattctctcataataaataaggg 16622056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 45695638 - 45695714
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataa 115  Q
    |||||||| ||||||| |||||||||| || || ||||||| ||||||||  || |||  |||| ||||||||||||    
T  45695638 tccatgaacacccttatattaattacttttcatcccaccaatttacttactcttaaattctctcccataataaataa 45695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 16130517 - 16130707
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16130517 tccatgaatacccttaaattaattactttttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagct 16130615  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  16130616 tcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagta 16130707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 16129967 - 16130157
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16129967 tccatgaatacccctaaattaattactttttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagct 16130065  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  16130066 tcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagta 16130157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 40988075 - 40988261
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaaa 141  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40988075 atgaatacccctaaattaattactctttattccgccaacttacttac-ttttaatattctctcataataaataagggcacaaatgaaatttagtttcaaa 40988173  T
Q  142 catacttgaaacttggtcaacatttcttataaaaaggacc-nnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||| |||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  40988174 catacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagta 40988261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 27654795 - 27654606
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagctt 137  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  27654795 ttccattaaaacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctcataataaataagggcacaaatgaaatttaactt 27654697  T
Q  138 caaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||| |||||| ||||||| |||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  27654696 caaagatacttaaaacttgatcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 27654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 9411919 - 9411731
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||| |    
T  9411919 ttccattaacacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaagtgaaatttaac 9411821  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggaggga 225  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||    
T  9411820 ttcaaatatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggga 9411731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 1553900 - 1553717
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  1553900 aatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaac 1553802  T
Q  143 atacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||| ||| |||| | |||||||||||||||||        | ||| |||||||||||||||||||||||||||||||||    
T  1553801 atacttgaaatttgatcaatacttcttataaaaaggaccacaaaaattctca-ttttgtttctaataaaaaggaccggagggagta 1553717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 27332948 - 27333132
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||  |||||||||| |||||||| |||||||||||||||||||||||    
T  27332948 aatacccttaaattaattactctttattccattaacttacttac-ttttaatattttctctcataatcaataagggtacaaatgaaatttagcttcaaac 27333046  T
Q  143 atacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagtaa 229  Q
    |||||| ||||||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||| |||||    
T  27333047 atacttaaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagtaa 27333132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 34546835 - 34546650
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaa 140  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  34546835 catgaatacccctaaattaattactctttattccaccaacttactta-cttttaatattttctcataataaataagggcagaaatgaaa-ttagcttcaa 34546738  T
Q  141 acatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||| ||||||| |||| |||| ||||||||| |||         | |||||||| ||||||||||||||||| | ||||||||    
T  34546737 acatacttaaaacttgatcaatattttttataaaaaagacaaaaaaaattctcacttttatttctaataaaaaggacggaagggagta 34546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 5800442 - 5800629
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||| |||||  ||||||||||||||| ||||||||||||||| ||||    
T  5800442 catgaatacccctaaattaatttctctttattccactaacttatttac-ttttaattttctctctcataataaataaggacacaaatgaaatttatcttc 5800540  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||   |||||||||||||||||        |  |||||||||||||||||||||||| | |||||||||    
T  5800541 aaacatacttgaaacttggtcaa-tcttcttataaaaaggaccaaaaaaattcccacttttgtttctaataaaaaggaactgagggagta 5800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 4813754 - 4813945
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattc--tctcataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||     
T  4813754 ttccatgaatacctttaaattaattacttttcattccaccaacttacttac-ttttaatattccttctcataataaataagggcacaaatgaaatttagt 4813852  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||| || |||| ||| ||||||||  |||||  ||||| |||||        | |||||||||||||| ||||||||||||||| ||||||    
T  4813853 ttcaagcacacttaaaaattggtcaaagtttctcgtaaaatggaccaaaaaaaatctcacttttgtttcttataaaaaggaccggatggagta 4813945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 36834419 - 36834287
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaa 140  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  36834419 catgaatacc--taaattaattactctttattccaccaacttacttac-ttttaatattctcttataataaataagggtacaaatgaaatttagcttcaa 36834323  T
Q  141 acatacttgaaacttggtcaacatttcttataaaaag 177  Q
    |||||||||||| ||  ||||  ||||||||||||||    
T  36834322 acatacttgaaatttaatcaa-ttttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 23933323 - 23933513
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||| |||| |||||||| ||||  |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  23933323 catgaatacccctaaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttc 23933422  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagtaa 229  Q
    ||||| | |||||| ||||||||  ||| |||||| | ||||         ||||||||||||||||||||||| ||| | ||||||||||    
T  23933423 aaacacatttgaaaattggtcaatgtttattataatatggactaacaaaattttcacttttgtttctaataaaatggatcagagggagtaa 23933513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 35050315 - 35050483
Alignment:
Q  46 atacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaaca 143  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||| |||    
T  35050315 atacccttaaattaattactctttatttcatcaacttacttac-ttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagaca 35050413  T
Q  144 tacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaag 214  Q
    ||||||||||||| || |  ||| |||||||||| |||        | |||||||||||||||||||||||    
T  35050414 tacttgaaacttgatcgatcttt-ttataaaaagaaccaaaaaaattctcacttttgtttctaataaaaag 35050483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 27846526 - 27846418
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagc 135  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||| |    
T  27846526 ttccatgaatatccttaaattaattactatctattccaccaacttacttac-ttttaatattatctctcataataaataagggtacaaatgaaatttaac 27846428  T
Q  136 ttcaaacata 145  Q
    ||||||||||    
T  27846427 ttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 30222879 - 30222693
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||  ||||||| ||||||  |||||||||| |||||| |||    
T  30222879 atgaatatccttaaattaattactctttaatccatcaacttactta-cttttaatattctctttcataatcaataagaacacaaatgaattttagcatca 30222781  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| |||||||||| ||||   |||||||||||| || |        | ||| |||||||||||||||||||||||||||| ||||    
T  30222780 aacatatttgaaacttgatcaa-tcttcttataaaaatgatcaaaaaaattctcatttttgtttctaataaaaaggaccggaggtagta 30222693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 45192575 - 45192765
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattc--tctcataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  ||||||||| ||||||  |||||||||| ||||||    
T  45192575 ttccatgaatacccttaaattaattactctttattccatcaacttactta-tttttaatattctgtctcataattaataagaacacaaatgaattttagc 45192673  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
     | ||| ||| | |||||||  ||||   ||||||||||||||| |        | |||||||||||||||||||||||||||||||| ||||    
T  45192674 ataaaaaatattagaaacttaatcaa-tcttcttataaaaaggatcaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 45192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 13879060 - 13879161
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttc 138  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||| | ||||||||||  ||||||||||||||||||||||||||||||||||||     
T  13879060 catgaatacc-ttaaattaattactctttcttccaccaacttatttac-tattaatattctatctcataataaataagggcacaaatgaaatttagcttt 13879157  T
Q  139 aaac 142  Q
    ||||    
T  13879158 aaac 13879161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 11908067 - 11907931
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagctt 137  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||| |||  |||||||| ||||||||||||||||| | |||||||||||||||| ||    
T  11908067 ttccatgaatacctttacattaattactcttgattccaccaacttatttat-ttttaatactctctcataataaataaagacacaaatgaaatttagttt 11907969  T
Q  138 caaacatacttgaaacttggtcaacatttcttataaaa 175  Q
      |||| |||| ||| ||  ||||  ||||||||||||    
T  11907968 tcaacacacttaaaaattattcaatgtttcttataaaa 11907931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 35121293 - 35121218
Alignment:
Q  105 ataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaacatttcttataaaaaggacc 181  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaa-tcttcttataaaaaggacc 35121218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 13879197 - 13879236
Alignment:
Q  190 tttcacttttgtttctaataaaaaggaccggagggagtaa 229  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  13879197 tttcacttttgtttctaataaaaaggatcggagggagtaa 13879236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 35121335 - 35121293
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaactta 83  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  35121335 catgaatacccttaaattaattcctctttattccactaactta 35121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 35428491 - 35428458
Alignment:
Q  42 atgaatacccttaaattaattactctttattcca 75  Q
    ||||||||||||||||||||||||||||||||||    
T  35428491 atgaatacccttaaattaattactctttattcca 35428458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 26961170 - 26961214
Alignment:
Q  89 cttttaatattctctcataataaataagggcacaaatgaaattta 133  Q
    |||||||||||||||| |||||||||||| |||| ||||| ||||    
T  26961170 cttttaatattctctcctaataaataaggtcacatatgaagttta 26961214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 27627939 - 27627753
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaa 140  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27627939 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctcataataaataagggcacaaatgaaatttagcttcaa 27627841  T
Q  141 acatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||| ||||||||||||||||| |        || ||||||||||||||||||||||||||||||||||||    
T  27627840 acatacttgaaacttggtcaatatttcttataaaaaggatcaaaaaaatttccacttttgtttctaataaaaaggaccggagggagta 27627753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 26877351 - 26877163
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  26877351 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctatctcataataaataaggacacaaatgaaatttagcttc 26877253  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||| ||| |||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  26877252 aaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 26877163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 782984 - 782793
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||||    
T  782984 ttccatgaatacccctaaattaattattctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaaagaaatttagc 782886  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| ||||||||||||||||||         | |||||||||||||||||||||||||||||||| ||||    
T  782885 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggaggtagta 782793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 36187510 - 36187319
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  36187510 ttccatgaatacccctaaattaattattctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 36187412  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| |||||||||||||||| || |||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||    
T  36187411 ttcaaatatacttgaaacttggttaatatttcttataaaaaggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagta 36187319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 30537636 - 30537823
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  30537636 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagcttc 30537734  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||   ||||||||||||||||         | |||||||||||||||| |||||||| |||||||||||    
T  30537735 aaacatacttgaaacttggtcaa-tcttcttataaaaaggacaaaaaaaaatctcacttttgtttctaacaaaaaggatcggagggagta 30537823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 43034136 - 43034322
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  43034136 atgaatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 43034234  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| |||||||||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||| ||||    
T  43034235 aacatatttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 43034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 50150325 - 50150509
Alignment:
Q  44 gaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaa 141  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||  ||||||| ||||||| |||||||||||||||||||||||    
T  50150325 gaatacccttaaattaattactttttattccatcaacttacttac-ttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaa 50150423  T
Q  142 catacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||| ||||||| ||||   |||||||||||||||||        | || ||||||||||||||||||||||||||||||||||    
T  50150424 catacttaaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcccttttgtttctaataaaaaggaccggagggagta 50150509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 25934527 - 25934341
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttc 138  Q
    |||||||||||| ||||||||| ||||||||||||| |||||| |||  ||||||| |||||||  ||||||||||||||||||||||||||||| ||||    
T  25934527 catgaataccct-aaattaattcctctttattccactaacttatttat-ttttaattttctctctcataataaataagggcacaaatgaaatttatcttc 25934430  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||   ||||||||||||||||         | ||||||||||||||||||||||||||||||| |||||    
T  25934429 aaacatacttgaaacttggtcaa-tcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 25934341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 3067915 - 3067729
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||  ||||||||||  ||||||||| || |||||| |||| ||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  3067915 catgaatacctctaaattaattcttctttattctactaacttatttac-ttttaattttctctctcataataaataagggcacaaatgaaatttagcttc 3067817  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||   ||||||||||||||||         | |||||||| ||||||||||||||||||||| ||||||    
T  3067816 aaacatacttgaaacttggtcaa-tcttcttataaaaaggacaaaaaaaattctcactttt-tttctaataaaaaggaccggatggagta 3067729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 33313418 - 33313300
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttc 138  Q
    |||||||| || ||||||||||  |||||||||||| |||||| |||| ||||||| |||||||  ||||||||||||||||||||| |||||||  ||     
T  33313418 catgaatatccataaattaattcatctttattccactaacttatttac-ttttaattttctctctcataataaataagggcacaaataaaatttatattt 33313320  T
Q  139 aaacatacttgaaacttggt 158  Q
    ||||||| || |||||||||    
T  33313319 aaacatatttaaaacttggt 33313300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 56551480 - 56551573
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagctt 137  Q
    |||| |||||| || ||||||||||||| ||||||| |||||      |||||| |||||||||  ||||||| |||||||||||||||||||||||||    
T  56551480 catgtatacccctatattaattactcttaattccacaaactt-----gcttttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 32305899 - 32305708
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  32305899 ttccatgaatacccctaaattaattattctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 32305801  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||    
T  32305800 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaggaccggaggtagta 32305708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 35634794 - 35634977
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    |||||||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  35634794 tccatgaataaccctaaattaattactctttatcgcaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagct 35634892  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccgga 221  Q
    ||||||||||||||||||||||||| |||||||||||||| |||         | |||||||||||| ||||||||| |||||||    
T  35634893 tcaaacatacttgaaacttggtcaatatttcttataaaaatgacaaaaaaaattctcacttttgtttataataaaaatgaccgga 35634977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 13882271 - 13882086
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  13882271 atgaatacccttaaattaattactctttattccatcaacttacttac--tttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 13882174  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| |||||||||| ||||   |||||||||||||||||        | |||||||| ||||||||||||||||||||||| ||||    
T  13882173 aacatatttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattctcacttttatttctaataaaaaggaccggaggtagta 13882086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 8669920 - 8669734
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  8669920 atgaatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttaacttca 8669822  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagtaa 229  Q
    ||||||||||||||||| ||||   ||||||||||||||| |        | |||||||| ||||||||||||||||||||| |||||||    
T  8669821 aacatacttgaaacttgatcaa-tcttcttataaaaagga-caaaaaaaatctcacttttatttctaataaaaaggaccggaaggagtaa 8669734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 8107081 - 8106899
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||| ||||  |||||||||||||||| |||||||||||||||| |||    
T  8107081 catgaatacccctaaattaattcctctttattccactaacttatttac-ttttaattttctatctcataataaataaggacacaaatgaaatttagtttc 8106983  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagg 223  Q
    |||||||||||||||||||||||   ||||||||||||||| |        | ||| ||||||||||||||||||||||||||||    
T  8106982 aaacatacttgaaacttggtcaa-tcttcttataaaaaggatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 29226459 - 29226286
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||  ||||||| ||||||| ||||||||||||||||||||||||    
T  29226459 aatacccttaaattaattactctttattccatcaacttacttac-ttttaatattttcattcataatcaataagg-cacaaatgaaatttagcttcaaac 29226362  T
Q  143 atacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccg 219  Q
    |||||||||||||| ||||   ||||||||||||||| |        | ||||||||||||||||||||||||||||    
T  29226361 atacttgaaacttgatcaa-tcttcttataaaaaggaacaaaaaaattctcacttttgtttctaataaaaaggaccg 29226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 42570089 - 42569953
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||| || ||||||||||||| |||||| || |||||||||||  |||||||||||||||  |||||||||||  |||||||| |||||||||||||    
T  42570089 atgaatatccctaaattaattactatttatttcatcaacttacttat-ttttaatattctctctcataataaataaatgcacaaataaaatttagcttca 42569991  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaag 177  Q
    |  |||||| |||||||||||| |||||||||||||||    
T  42569990 atgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 37533953 - 37533773
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||||  ||||| |||||||||||||| |||||||| |||||    
T  37533953 atgaatacatttaaattaattactctttattccatcaacttacttat-ttttaatattctctctcataatcaataagggcacaaacgaaatttaacttca 37533855  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggag 222  Q
    || ||| |||||||||| ||||   |||| |||||||||| |        | |||||||||||| |||||||||||| |||||    
T  37533854 aatatatttgaaacttgatcaa-tcttctaataaaaaggatcaaaaaaattctcacttttgtttataataaaaaggatcggag 37533773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  56 attaattactctttattccaccaacttacttaccttttaatattctctc-----ataataaataagggcacaaatgaaatttagcttcaaacatacttga 150  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||     ||||||||||||| |||||||||||||||||||| |||| | ||||    
T  36741715 attaattactcttaattccactaacttacttac-ttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttga 36741813  T
Q  151 aa 152  Q
    ||    
T  36741814 aa 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 17855539 - 17855397
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttt--taatattctctcataataaataagggcacaaatgaaatttagc 135  Q
    ||||| |||||||| ||||||||||||| ||   ||||  |||||| |||| |||  || |||| |||||| ||||||||||  |||||||||||||||     
T  17855539 ttccaagaatacccctaaattaattactattgcctccattaacttaattacttttaatactatt-tctcatcataaataaggatacaaatgaaatttagt 17855441  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaagga 179  Q
    ||| |||| |||| ||| ||| |||| |||||||||||||||||    
T  17855440 ttccaacacacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 48394171 - 48394354
Alignment:
Q  44 gaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctcataataaataagggcacaaatgaaatttagcttcaaaca 143  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  48394171 gaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctttcataataaataagggcacaaatgaaatttagtttcaaaca 48394269  T
Q  144 tacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||| |||||||||||| ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  48394270 tacttaaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagta 48394354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 23319978 - 23320122
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  23319978 ttccatgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggcacaaatgaaatttagc 23320076  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggacc 181  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  23320077 ttcaaacatacttgaaacttggtcaatatttcttataaaaatgacc 23320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 24989900 - 24989714
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  24989900 atgaatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 24989802  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||| ||||   |||| ||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  24989801 aacatacttgaaacttgatcaa-tcttctaataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 24989714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 48390322 - 48390513
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagc 135  Q
    |||||||||||||| ||||||||||| | |||||| || |||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||    
T  48390322 ttccatgaatacccctaaattaattattttttatttcatcaacttacttac-ttttaatattctcactcataataaataaggacacaaatgaaatttagc 48390420  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||    
T  48390421 ttcaaacatacttgaaacttggtcaatatttcttataaaaaggataaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagta 48390513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 18674691 - 18674552
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  18674691 catgaatacccctaaattaattactctttattccaccaacttacttat-tttcaatattctctcttataataaataagggcacaaatgaaatttagcttc 18674593  T
Q  139 aaacatacttgaaacttggtcaacatttcttataaaaaggac 180  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  18674592 aaacatacttgaaacttggtcaa-ttttcttataaaaaggac 18674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 8417835 - 8417659
Alignment:
Q  52 ttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttcaaacatacttg 149  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttac-ttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttg 8417737  T
Q  150 aaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    ||||||| ||||   ||||||||||||||||         | |||||||||||||||||||||||||||||||| ||||    
T  8417736 aaacttgatcaa-tcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 8417659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 7568184 - 7568305
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctct--cataataaataagggcacaaatgaaatttagcttc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  7568184 catgaatacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctttcataataaataagggcacaaatgaaatttaccttc 7568282  T
Q  139 aaacatacttgaaacttggtcaa 161  Q
    |||||||||||||||||| ||||    
T  7568283 aaacatacttgaaacttgatcaa 7568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 41851021 - 41851141
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  41851021 atgaatacccctaaattaattactctttattccaccaactcacttac-ttttaatattctctctcataataaataagggtacaaatgaaatttagtttca 41851119  T
Q  140 aacatacttgaaacttggtcaa 161  Q
    ||||||||||||||||||||||    
T  41851120 aacatacttgaaacttggtcaa 41851141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 45062642 - 45062522
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||  ||||| || ||||||||| |||||||||||||| |    
T  45062642 atgaatacccttaaattaattactttttattccatcaacttacttac-ttttaatattctctctcataatcaacaagggcacagatgaaatttagcttta 45062544  T
Q  140 aacatacttgaaacttggtcaa 161  Q
    |||||| |||||||||| ||||    
T  45062543 aacatatttgaaacttgatcaa 45062522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 6890 - 6703
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  6890 atgaatatccttaaattaattactctttattctaccaacttacttac-ttttaatattctttctcataataaataagcgcacaaatgaaatttagcttca 6792  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||| |||||||||||||| ||||        ||| |||||||||||||||||||||||||||| ||||||    
T  6791 aacatacttgaaacttggtcaatatttcttataaaaatgaccaaattttttttaacttttgtttctaataaaaaggaccggatggagta 6703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 24868658 - 24868467
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagc 135  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||| |    
T  24868658 ttccattaacacccctaaattaattactctttattccaccaacttacttac-ttttaatattctctctcataataaataagggtacaaatgaaatttaac 24868560  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||| |||||||||||||| |||         | |||||||||||||||||||||||||  ||||||||||    
T  24868559 ttcaaacatacttgaaacttggtcaatatttcttataaaaaagacaaaaaaaattctcacttttgtttctaataaaaaggatgggagggagta 24868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 40385238 - 40385430
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagct 136  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  40385238 tccatgaatacccctaaattaattcctctttattccactaacttatttac-ttttaattttctctctcataataaataagggcacaaatgaaatttagct 40385336  T
Q  137 tcaaacatacttgaaacttggtcaacat--ttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||||||||||||||  |  |||||||||||||||||        | |||||||||||||||||||||||||||||||| ||||    
T  40385337 tcaaacatacttgaaacttggtcaatcttcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 40385430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 21262907 - 21263090
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatattctc--tcataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||| |||| ||||||||||||||||||||||    
T  21262907 aatacccttaaattaattactctttattccatcaacttacttac-ttttaatattctctctcataatcaatatgggcgcaaatgaaatttagcttcaaac 21263005  T
Q  143 atacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||||||||||| ||||   |||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  21263006 atacttgaaacttgatcaa-tcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggagggagta 21263090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 33314504 - 33314329
Alignment:
Q  53 taaattaattactctttattccaccaacttacttaccttttaatattctctc--ataataaataagggcacaaatgaaatttagcttcaaacatacttga 150  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  33314504 taaattaattactctttattccaccaacttgcttac-ttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttga 33314406  T
Q  151 aacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggagta 228  Q
    |||||| ||||   |||||||||||||||||        | |||||||||||| ||||||||||||| ||||||||||    
T  33314405 aacttgatcaa-tcttcttataaaaaggaccaaaaataatctcacttttgtttataataaaaaggactggagggagta 33314329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 3097554 - 3097741
Alignment:
Q  39 tccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattc--tctcataataaataagggcacaaatgaaatttagct 136  Q
    |||||| |||||| |||||||| | ||||||||||||| |||||| |||| ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  3097554 tccatgtatacccctaaattaaatcctctttattccactaacttatttac-ttttaattttcactctcataataaataagggcacaaatgaaatttagct 3097652  T
Q  137 tcaaacatacttgaaacttggtcaacatttcttataaaaaggac-cnnnnnnnntttcacttttgtttctaataaaaaggaccggaggga 225  Q
    |||||||||||||||||||||||||   ||||||||||||||||          | ||||||||||||||||||||||||||||||||||    
T  3097653 tcaaacatacttgaaacttggtcaa-tcttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggaggga 3097741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 41174666 - 41174851
Alignment:
Q  41 catgaatacccttaaattaattactctttattccaccaacttacttaccttttaatat-tctctcataataaataagggcacaaatgaaatttagcttca 139  Q
    ||||||||||| | |||||||| ||||||||| ||| |||||| |||| ||| | | | ||||||||||||||||||||||||||||||||||||||| |    
T  41174666 catgaatacccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaa 41174765  T
Q  140 aacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaaggaccggagggag 226  Q
    || |||||||||||||||||||   |||||||||||||||||        | ||||||||||||||| |||||||||||||||||||    
T  41174766 aatatacttgaaacttggtcaa-tcttcttataaaaaggaccaaaaaaattctcacttttgtttctattaaaaaggaccggagggag 41174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 4238039 - 4237936
Alignment:
Q  42 atgaatacccttaaattaattactctttattccaccaacttacttaccttttaatattct--ctcataataaataagggcacaaatgaaatttagcttca 139  Q
    |||||||||| |||||||||||||||| |||||||||| |||||| | ||||| ||||||  |||||||||||||| ||||||||||||||||| |||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttactt-cattttattattctatctcataataaataacggcacaaatgaaatttaacttca 4237941  T
Q  140 aacat 144  Q
    |||||    
T  4237940 aacat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 2934905 - 2935070
Alignment:
Q  53 taaattaattactctttattccaccaacttacttaccttttaatat--tctctcataataaataagggcacaaatgaaatttagcttcaaacatacttga 150  Q
    ||||||||||||| || |||||  ||| ||| |||| ||||||||   |||||||||||||||||||| | |||||||||||| ||||||| | |||| |    
T  2934905 taaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacacttaa 2935004  T
Q  151 aacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttttgtttctaataaaaagga 216  Q
    || ||||| ||  |||||||||||||||||         |||||||||||||||| ||||||||||    
T  2935005 aaattggtaaatctttcttataaaaaggactcaaaataatttcacttttgtttcttataaaaagga 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 4238188 - 4238147
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaa 79  Q
    |||| ||||||||| |||||||||||||||| ||||||||||    
T  4238188 ttccctgaatacccctaaattaattactcttgattccaccaa 4238147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 30601 - 30463
Alignment:
Q  38 ttccatgaatacccttaaattaattactctttattccaccaacttacttaccttttaatatt--ctctcataataaataagggcacaaatgaaatttagc 135  Q
    |||||| ||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||      
T  30601 ttccataaatacccctaaattaattactcttgattccgccaacttacttac-ttttaatattgtctctcataataaataagggcacaaatgaaatttaat 30503  T
Q  136 ttcaaacatacttgaaacttggtcaacatttcttataaaa 175  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  30502 ttcaaacaaacttgaaaattggtcaacatttcttataaaa 30463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 30839 - 30960
Alignment:
Q  45 aatacccttaaattaattactctttattccaccaacttacttaccttttaatat--tctctcataataaataagggcacaaatgaaatttagcttcaaac 142  Q
    ||||||| |||||||||||||||| ||||||||||| ||     ||||||||||  ||||||||||||||||||||| || |||||       |||||||    
T  30839 aatacccctaaattaattactcttgattccaccaacata-----cttttaatattctctctcataataaataagggcgcacatgaa------tttcaaac 30927  T
Q  143 atacttgaaacttggtcaacatttcttataaaa 175  Q
    | |||| ||| ||||||||||||||||||||||    
T  30928 acacttaaaaattggtcaacatttcttataaaa 30960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 258380 - 258509
Alignment:
Q  99 tctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaacatttcttataaaaaggaccnnnnnnnntttcacttt 198  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||        | |||||||    
T  258380 tctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttt 258479  T
Q  199 tgtttctaataaaaaggaccggagggagta 228  Q
    ||||||||||||||||||||||| ||||||    
T  258480 tgtttctaataaaaaggaccggatggagta 258509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University