View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19086_low_4 (Length: 345)
Name: NF19086_low_4
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19086_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6515309 - 6515557
Alignment:
| Q |
1 |
taatactagagtattgcttaagttagagaattgaagaggtaagttttcatgaga----gttaacaaatgttgtgaaacttaccttcatgaaataagttag |
96 |
Q |
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| T |
6515309 |
taatactagagtattgcttaagttagagaattgaagaggtaagttttcatgagaataagttaacaaatgttgtgaaacttaccttcatgagataagttag |
6515408 |
T |
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| Q |
97 |
agaataaaagaaatgttttgcttgtattttagtgctgtataaatagttgtataaaagctttgtttgaccgacgacataatcatgcttcctctttctcaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6515409 |
agaataaaagaaatgttttgcttgtattttagtgctgtataaatagttgtataaaagctttgtttgaccgacgacataatcatgcttcctctttctcaaa |
6515508 |
T |
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| Q |
197 |
attaaattag---tatgtaccataagcaggtgcggacctaatgtgtagg |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
6515509 |
attaaattagtactatgtaccataagcaggtgcggacctaatgtatagg |
6515557 |
T |
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