View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19086_low_6 (Length: 306)

Name: NF19086_low_6
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19086_low_6
NF19086_low_6
[»] chr7 (12 HSPs)
chr7 (127-283)||(1541243-1541399)
chr7 (127-283)||(1550477-1550633)
chr7 (127-286)||(2321420-2321579)
chr7 (127-275)||(2329929-2330077)
chr7 (127-282)||(3852734-3852889)
chr7 (127-283)||(1088881-1089037)
chr7 (127-283)||(1106230-1106386)
chr7 (127-275)||(2337828-2337976)
chr7 (127-283)||(3955235-3955391)
chr7 (139-283)||(1557199-1557343)
chr7 (127-283)||(1604617-1604773)
chr7 (127-283)||(1596287-1596443)
[»] scaffold0491 (2 HSPs)
scaffold0491 (127-283)||(5780-5936)
scaffold0491 (127-283)||(893-1049)
[»] chr8 (4 HSPs)
chr8 (127-283)||(18723287-18723443)
chr8 (127-283)||(18748939-18749095)
chr8 (127-283)||(18739014-18739170)
chr8 (127-283)||(18743978-18744134)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 1541243 - 1541399
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||| ||||||| ||    
T  1541243 ttaccaggagctatatatccaatagttccagaaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcagacacactagcct 1541342  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  1541343 gccactcagagtttagcaagatattgctagtagatacatctcaatgcactattggag 1541399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 1550477 - 1550633
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||| ||||| ||||||| ||    
T  1550477 ttaccgggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggaatcgagctgtgccaaagtcagagacactagcct 1550576  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
     ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  1550577 tccactcagagtttagcaagatattgctagtagatacatctctatgcactattggag 1550633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 2321579 - 2321420
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| ||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  2321579 ttaccaggagctatatatccaatggttccagcaactatagttcggtttgatgaatcatattgaaggagtcgagctgttccaaagtcagaaacactaggat 2321480  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggagggg 286  Q
    |||||||||| |||||||||||||| |  |||||||||||||| ||||||||||||||||    
T  2321479 gccactcagagtttagcaagatattgctggtagatacatctctgtgcactattggagggg 2321420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 2330077 - 2329929
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    |||||||| |||||||| ||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  2330077 ttacctggagctatatatccaattgttccaacaactatagttcgattcgatgaatcatattgaaggagtcgagatgtgccaaagtcagaaacactaggct 2329978  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcac 275  Q
     ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  2329977 tccactcagagtttagcaagatattgcccgtagatacatctctatgcac 2329929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 3852889 - 3852734
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |  |||| ||||||||||||||||    
T  3852889 ttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcacattgaaggagtcgagctataccaaagtcagaaacactaggct 3852790  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattgga 282  Q
    |||| || || ||||| |||||||| | ||||||||||||||||||||||||||||    
T  3852789 gccattccgagtttagaaagatattgctagtagatacatctctatgcactattgga 3852734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 1089037 - 1088881
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||| || |  ||||| | ||    
T  1089037 ttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtccgcgacactggcct 1088938  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  1088937 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 1088881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 1106386 - 1106230
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||| ||||  ||||| | ||    
T  1106386 ttaccaggagctatatatccaatagttccagcaactattgttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcagcgacactggcct 1106287  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | | ||||||||||||||||||| |||||||    
T  1106286 gccactcagagtttagcaagatattgctactagatacatctctatgcacgattggag 1106230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 2337976 - 2337828
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    |||||||| |||||||| ||||| |||||| |||||||||||||||  ||||||||||||||||||| ||||| |||  |||| ||||||||||||||||    
T  2337976 ttacctggagctatatatccaattgttccaacaactatagttcgatttgatgaatcatattgaaggattcgagatgtgccaaagtcagaaacactaggct 2337877  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcac 275  Q
     |||||| || |||||||||||||| |||||||||||||||||||||||    
T  2337876 tccactccgagtttagcaagatattgccagtagatacatctctatgcac 2337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 3955235 - 3955391
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||| ||||||| ||| |||  ||||||||||||||||||||||||||| |  |||| ||||||||||||||||    
T  3955235 ttaccaggagctatatatccaatagttccaccaactattgtttgattagatgaatcatattgaaggagtcgagctatgccaaagtcagaaacactaggct 3955334  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||| || || |||||||||||||| | |||||||||||||||||||||||||||||    
T  3955335 gccattctgagtttagcaagatattgctagtagatacatctctatgcactattggag 3955391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 1557199 - 1557343
Alignment:
Q  139 atataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggctgccactcagaat 238  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||| ||||||||| |||||||||||| |    
T  1557199 atatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccaaagtcacaaacactagcctgccactcagagt 1557298  T
Q  239 ttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    | |  || ||||| | | |||||||||||||||||||||||||||    
T  1557299 taacaaatatattgctactagatacatctctatgcactattggag 1557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 1604773 - 1604617
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||| ||| ||||||||| ||    
T  1604773 ttaccaggagctatatatccaatagttccagcaactatagttcgattggatgaattatattgaaggagtcgagctgtgccaaagtcacaaacactagcct 1604674  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||| | |||||||| ||||| | | ||||||||||||||||||  |||||||    
T  1604673 gccactcatagtttagcaatatattgctactagatacatctctatgcatgattggag 1604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 1596443 - 1596287
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||  |||| ||| |||||||||  |    
T  1596443 ttaccaggagctatatatccaatagttccagcaactatagttcgatttgatgaatcatattgaaggagtcgggatgtgccaaagtcacaaacactagcat 1596344  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||| ||||| ||||| |||||||| | | |||||||||||||||||||||||||||    
T  1596343 gccattcagagtttagtaagatattgctactagatacatctctatgcactattggag 1596287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 5780 - 5936
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || ||| ||||||| | ||    
T  5780 ttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactggcct 5879  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  5880 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 5936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 893 - 1049
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |  | || ||| ||||||| | ||    
T  893 ttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactggcct 992  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  993 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 1049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 18723287 - 18723443
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || ||| ||||||| | ||    
T  18723287 ttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactggcct 18723386  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  18723387 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 18723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 18748939 - 18749095
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || ||| ||||||| | ||    
T  18748939 ttacccggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagtcgagctgtgccgaagtcacaaacactggcct 18749038  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  18749039 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 18749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 18739014 - 18739170
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |  | || ||| ||||||| | ||    
T  18739014 ttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactggcct 18739113  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  18739114 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 18739170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 18743978 - 18744134
Alignment:
Q  127 ttacctggggctatataaccaatagttccagcaactatagttcgataggatgaatcatattgaaggagtcgagctgttacaaaatcagaaacactaggct 226  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |  | || ||| ||||||| | ||    
T  18743978 ttacctggagctatatatccaatagttccagcaactatagttcgattggatgaatcatattgaaggagccgagctatgccgaagtcacaaacactggcct 18744077  T
Q  227 gccactcagaatttagcaagatattaccagtagatacatctctatgcactattggag 283  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  18744078 gccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggag 18744134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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