View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19086_low_9 (Length: 228)
Name: NF19086_low_9
Description: NF19086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19086_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 41755084 - 41754889
Alignment:
| Q |
16 |
gtattaacgcatatattcatagccaacatcacaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaat |
115 |
Q |
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| T |
41755084 |
gtattaacgcatatattcatagccaacatcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaat |
41754985 |
T |
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| Q |
116 |
gcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatat |
214 |
Q |
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| T |
41754984 |
gcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgac---aacagcaactctgtaaaattgtttgtatttggagattcatat |
41754889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 41760936 - 41760799
Alignment:
| Q |
71 |
gtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgaca |
170 |
Q |
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| T |
41760936 |
gtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacagaagtggtcgaagggactaagaaatcatatggtgtgtatgaca |
41760837 |
T |
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| Q |
171 |
acaacagcagctctgtaaaattgtttgtatttggagattcatat |
214 |
Q |
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| T |
41760836 |
aaaa------ctctgtaaaattgtttgtatttggagactcatat |
41760799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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