View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19087_high_1 (Length: 489)
Name: NF19087_high_1
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 102 - 475
Target Start/End: Complemental strand, 4265139 - 4264766
Alignment:
| Q |
102 |
actagttcaaatattatataatgaccctggcccttgtggtccaatcatagggactagatgtacacatcattattccaatcttcatctaatttcatagttc |
201 |
Q |
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| T |
4265139 |
actagttcaaatattatataatgaccctggcccttgtggtccaatcatagggactagatgtacacatcattattccaatcttcatctaatttcatagttc |
4265040 |
T |
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| Q |
202 |
caagtggaagggaacaaagaattaattggttactacttacttacttcagtaaatggacctcaagtttgtactataaatatgactctctatctttatttgc |
301 |
Q |
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| T |
4265039 |
caagtggaagggaacaaagaattaattggttactacttacttacttcagtaaatggacctcaagtttgtactataaatatgactctctatctttatttgc |
4264940 |
T |
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| Q |
302 |
tttccatcccataaacccttctcttattcatagttatttttagtttctcttacatttagcatcctaaataattccttgaatttctctcttctttgtgctt |
401 |
Q |
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| T |
4264939 |
tttccatcccataaacccttctcttattcatagttatttttagtttctcttacatttagtatcctaaataattccttgaatttctctcttctttgtgctt |
4264840 |
T |
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| Q |
402 |
gacattttgtcattgaacatgatggaacataattttaagcaccaaattggttttgtttgtgtcatgttgttctt |
475 |
Q |
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| T |
4264839 |
gacattttgtcattgaacatgatggaacataattttaagcaccaaattggttttatttgtgtcatgttgttctt |
4264766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4265242 - 4265172
Alignment:
| Q |
10 |
aagaatattgtttcaatgtaaaacaaaattaggcatttcccactgcaataataaactggttatgtgcaccc |
80 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4265242 |
aagaaaattgtttcaatgtaaaacaaaattaggcatttcccactgcaataataaactggttatgtacaccc |
4265172 |
T |
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