View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19087_high_9 (Length: 244)
Name: NF19087_high_9
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_high_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 6222308 - 6222078
Alignment:
| Q |
18 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacaca--ttctggaggtaaagtaaaaatgaagatttttgtggatagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
6222308 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacacaaattctgaaggtaaagtaaaaatgaagatttttgtgggtagt |
6222209 |
T |
|
| Q |
116 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccacttcgaaagttgctaagagcacatgtacataccaatgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
6222208 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccatttagaaagtagctaagagcacatgtacataccaatgaa |
6222109 |
T |
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| Q |
216 |
aatgcat--ttttctgtctcaatttgacttt |
244 |
Q |
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||||||| |||| ||||||||||||||||| |
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| T |
6222108 |
aatgcatttttttttgtctcaatttgacttt |
6222078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 14837644 - 14837872
Alignment:
| Q |
18 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacaca--ttctggaggtaaagtaaaaatgaagatttttgtggatagt |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
14837644 |
caattactaaatgacgcggtctatacaaagaaaaggacaaatcacatacttaaacacaaattctggaggtaaagtaaaaatgaagatttttgtgggtagt |
14837743 |
T |
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| Q |
116 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccacttcgaaagttgctaagagcacatgtacataccaatgaa |
215 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
14837744 |
tattattgacttttttattattcagatttttgcgtttgtgacattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaa |
14837843 |
T |
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| Q |
216 |
aatgcatttttctgtctcaatttgacttt |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
14837844 |
aatgcatttttctgtctcaatttgacttt |
14837872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 22784094 - 22783866
Alignment:
| Q |
18 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacaca--ttctggaggtaaagtaaaaatgaagatttttgtggatagt |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||| ||||||||||||| | || |
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| T |
22784094 |
caattactaaatgactcggtctatacaaagaagaggacaaatcacatacttaaacacaaattttggaggtaaagtaaaaatcaagatttttgtgggtggt |
22783995 |
T |
|
| Q |
116 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccacttcgaaagttgctaagagcacatgtacataccaatgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
22783994 |
tattattgacatttttattattcagatttttgtgtttgtggcattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaa |
22783895 |
T |
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| Q |
216 |
aatgcatttttctgtctcaatttgacttt |
244 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
22783894 |
aatgcatttatctgtctcaatttgacttt |
22783866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 27964045 - 27963818
Alignment:
| Q |
18 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacaca--ttctggaggtaaagtaaaaatgaagatttttgtggatagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
27964045 |
caattactaaatgacgcggtctatacaaagaaaaggacaaatcacatacttaaacacaaattctggaggtaaagtaaaaatgaagatttttgtgggtagt |
27963946 |
T |
|
| Q |
116 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccacttcgaaagttgctaagagcacatgtacataccaatgaa |
215 |
Q |
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||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
27963945 |
tattattga-attattattattcagatttttgcgtttgtgacattgctcgctgaggtgccagttagaaagtagctaagagcacatgtacataccaatgaa |
27963847 |
T |
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| Q |
216 |
aatgcatttttctgtctcaatttgacttt |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27963846 |
aatgcatttttctgtctcaatttgacttt |
27963818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 39274745 - 39274690
Alignment:
| Q |
189 |
ctaagagcacatgtacataccaatgaaaatgcatttttctgtctcaatttgacttt |
244 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39274745 |
ctaaaagcacatgtacataccaatgaaaatgcatttttctgtcacaatttgacttt |
39274690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 26443396 - 26443171
Alignment:
| Q |
18 |
caattactaaatgacgcggtctatacaaagaagaggacaactcacattcttaaacaca--ttctggaggtaaagtaaaaatgaagatttttgtggatagt |
115 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
26443396 |
caattactaaatgacgcggactatacaaagaagaggacaaatcacataggtaaacacaaattctggaggtaaagtaaaaatgaagatttttgtgggtagt |
26443297 |
T |
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| Q |
116 |
tattattgacatttttattattcagatttttgtgtttgtgacattgctcgctgaggtgccacttcgaaagttgctaagagcacatgtacataccaatgaa |
215 |
Q |
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|||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || |||||| |||| |||||||||||||||||||||| |
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| T |
26443296 |
tatt---gacatttttatttttcagatttttgtggttgtgacattgctcgctaaggtgccaattagaaagtatctaaaagcacatgtacataccaatgaa |
26443200 |
T |
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| Q |
216 |
aatgcatttttctgtctcaatttgacttt |
244 |
Q |
| |
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| |||||||||||||| |||||||||||| |
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| T |
26443199 |
agtgcatttttctgtcacaatttgacttt |
26443171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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