View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19087_low_12 (Length: 238)
Name: NF19087_low_12
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 34787829 - 34788045
Alignment:
| Q |
8 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
107 |
Q |
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| T |
34787829 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
34787928 |
T |
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| Q |
108 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
207 |
Q |
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| T |
34787929 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
34788028 |
T |
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| Q |
208 |
ttgagcttagatataat |
224 |
Q |
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||||||||||||||||| |
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| T |
34788029 |
ttgagcttagatataat |
34788045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 2293368 - 2293152
Alignment:
| Q |
8 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
107 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
2293368 |
tgagatgaagaataagtttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatattcat |
2293269 |
T |
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| Q |
108 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
207 |
Q |
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| T |
2293268 |
atggaggagatgcttggcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatataaaat |
2293169 |
T |
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| Q |
208 |
ttgagcttagatataat |
224 |
Q |
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||||||| ||||||||| |
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| T |
2293168 |
ttgagctgagatataat |
2293152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 33636021 - 33635822
Alignment:
| Q |
8 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
107 |
Q |
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|||||||||||||| || | |||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || ||| |
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| T |
33636021 |
tgagatgaagaatagattcgtcaatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacatacat |
33635922 |
T |
|
| Q |
108 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
207 |
Q |
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|||||| |||| ||||||||||| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| ||||||| |
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| T |
33635921 |
atggagaagattcttggcaatgtcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaat |
33635822 |
T |
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