View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19087_low_14 (Length: 237)
Name: NF19087_low_14
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19087_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 15908854 - 15908676
Alignment:
| Q |
45 |
ttcttaaaaattactatgttcgaatttatctatcagaacagaagaaaagaaaattcagagaagtgtagtttttaagaaatat--gcaggggttaaaagtg |
142 |
Q |
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| T |
15908854 |
ttcttaaaaatcattatgttcgaatttatctatcaaaacacaagaaaagtaaattcggaaagatgtagcttttaagaaatatatgtaggggttaaaagta |
15908755 |
T |
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| Q |
143 |
tgtctaaaattgagatctacaaatttgttactgcatatagttaagagaagtattttgtcaaatagttaaaacaagtact |
221 |
Q |
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| T |
15908754 |
tgtctaaaattgagatctataaatttgttactgcatatagttaagagaagcattttgtcaaatagttaaaacaagtact |
15908676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 15877940 - 15878101
Alignment:
| Q |
45 |
ttcttaaaaattactatgttcgaatttatctatcagaacagaagaaaagaaaattcagagaagtgtagtttttaagaaatatgc--aggggttaaaa--- |
139 |
Q |
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| T |
15877940 |
ttcttaaaaatcactatgttcgaatttatctatcagaacacaagaaaagtaaattcggatagatgtagtttttaagaaatatgtgtaggggttaaaactt |
15878039 |
T |
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| Q |
140 |
----gtgtgtctaaaattgagatctacaaatttgttactgcatatagttaagagaagtattt |
197 |
Q |
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| T |
15878040 |
aaaagtatgtctaaaattgagatctacaaatttgttactgcatatagttaagagaagtattt |
15878101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 15891539 - 15891461
Alignment:
| Q |
143 |
tgtctaaaattgagatctacaaatttgttactgcatatagttaagagaagtattttgtcaaatagttaaaacaagtact |
221 |
Q |
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| T |
15891539 |
tgtctaaaattgagatctacaaatttgttactacatatagttaagagaagtattttgtcaaatagttaaaacaagtact |
15891461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 15890710 - 15890546
Alignment:
| Q |
45 |
ttcttaaaaattactatgttcgaatttatctatcagaacagaagaaaagaaaattcagagaagtgtagtttttaagaa--atatgcagggg-------tt |
135 |
Q |
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| T |
15890710 |
ttcttaaaaatcactatattggaatttatctatcagaacacaagaaaagtatattcggagagatgtagtttttaagaaatatatgcaggggttaaaactt |
15890611 |
T |
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| Q |
136 |
aaaagtgtgtctaaaattgagatctacaaatttg----ttactgcatatagttaagagaagtatt |
196 |
Q |
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| T |
15890610 |
aaaagtatgtctaaaattgagatctacaaatttgttaattacttcatatggttaagagaagtatt |
15890546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 15892033 - 15891955
Alignment:
| Q |
48 |
ttaaaaattactatgttcgaatttatctatcagaacagaagaaaagaaaattcagagaagtgtagtttttaagaaatat |
126 |
Q |
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| T |
15892033 |
ttaaaaatcactatgttcgaacttatctatcagaacacaagaaaagtaaattcggaaagatgtagcttttaagaaatat |
15891955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17944930 - 17944971
Alignment:
| Q |
1 |
tttggttgggtgtgagcgaaacttgctgagagaagagtagaa |
42 |
Q |
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| T |
17944930 |
tttggttgggtgggagcgaaacttgctgggagaagagcagaa |
17944971 |
T |
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