View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19087_low_2 (Length: 371)

Name: NF19087_low_2
Description: NF19087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19087_low_2
NF19087_low_2
[»] chr1 (2 HSPs)
chr1 (13-356)||(5129891-5130233)
chr1 (101-157)||(26324397-26324453)
[»] chr5 (12 HSPs)
chr5 (166-242)||(8640656-8640732)
chr5 (187-242)||(9002546-9002601)
chr5 (191-242)||(8534701-8534752)
chr5 (173-242)||(8548797-8548866)
chr5 (179-234)||(8677535-8677590)
chr5 (204-242)||(1601078-1601116)
chr5 (173-234)||(8528118-8528179)
chr5 (198-234)||(9002294-9002330)
chr5 (179-234)||(8636311-8636366)
chr5 (198-241)||(8640461-8640504)
chr5 (204-234)||(9075170-9075200)
chr5 (101-157)||(8528038-8528094)
[»] chr7 (2 HSPs)
chr7 (173-242)||(48362540-48362609)
chr7 (187-239)||(35777535-35777587)
[»] chr6 (1 HSPs)
chr6 (203-239)||(16715635-16715671)
[»] chr4 (1 HSPs)
chr4 (101-157)||(9442205-9442261)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 5129891 - 5130233
Alignment:
Q  13 tactaagcaggagtcagaataccaatcaatgagaaaacacacatacagtactattcttaagaagtgggctcttcgttgaattcttcagtcttctccatca 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129891 tactaagcaggagtcagaataccaatcaatgagaaaatacacatacaatactattcttaagaagtgggctcttcgttgaattcttcagtcttctccatca 5129990  T
Q  113 gattcggaggaagatatatttattatgtcaggataagatgatgaagaatgtgtactttccacaatctgttgggacaaggaaaaaacttcattttcttccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129991 gattcggaggaagatatatttattatgtcaggataagatgatgaagaatgtgtactttccacaatctgttgggacaaggaaaaaacttcattttcttccc 5130090  T
Q  213 gcaatttaaactttgcacacctgtataaataaataaaaacaatatttatgtaatactagctaaaattgcaaattgcaggggagggaattgtgttgtgaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  5130091 gcaatttaaactttgcacacctgtataaataaataaaaacaatatttatgtaatactagctaaaactgcaatttgcaggggaggg-attgtgttgtgaaa 5130189  T
Q  313 ctattgactacttagcaactaaaggagatttataagatgtaatt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5130190 ctattgactacttagcaactaaaggagatttataagatgtaatt 5130233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 26324453 - 26324397
Alignment:
Q  101 tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa 157  Q
    ||||| |||||||||  |||||||||||||||||| | ||||  |||||||||||||    
T  26324453 tcttcaccatcagataaggaggaagatatatttatcaagtcaccataagatgatgaa 26324397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 8640656 - 8640732
Alignment:
Q  166 actttccacaatctgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  8640656 actttgcacaatccgttgagacaaggaaaaaacttcattttcttctcccaatttaaactttgcacacctatataaat 8640732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 9002546 - 9002601
Alignment:
Q  187 caaggaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  9002546 caaggaaaaaacttcactttcttccctcaatttaaactttgcacacctatataaat 9002601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 8534701 - 8534752
Alignment:
Q  191 gaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||||    
T  8534701 gaaagaacttccttttcttcccgcaatttaaactttgcacacctatataaat 8534752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 8548866 - 8548797
Alignment:
Q  173 acaatctgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    ||||||||||| ||||| |||| |||||| ||||||||| | |||||||||||| ||||||| |||||||    
T  8548866 acaatctgttgagacaacgaaataacttctttttcttcctgaaatttaaactttacacacctatataaat 8548797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 8677535 - 8677590
Alignment:
Q  179 tgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacct 234  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||  |||||||||||    
T  8677535 tgttgtgacaaggaaagaacttcattttcttcccgcaattcaacatttgcacacct 8677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 1601116 - 1601078
Alignment:
Q  204 tttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  1601116 tttcttcccgcaatttaaactttgcacacctatataaat 1601078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 8528118 - 8528179
Alignment:
Q  173 acaatctgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacct 234  Q
    ||||||||||| ||||  |||| ||| || |||||| |||||||||||||||||||||||||    
T  8528118 acaatctgttgagacagagaaagaacctccttttctccccgcaatttaaactttgcacacct 8528179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 9002294 - 9002330
Alignment:
Q  198 cttcattttcttcccgcaatttaaactttgcacacct 234  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9002294 cttcattttcttcacgcaatttaaactttgcacacct 9002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 8636311 - 8636366
Alignment:
Q  179 tgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacct 234  Q
    ||||| |||||||||| |||||||||||||||| |||||| ||  |||||||||||    
T  8636311 tgttgagacaaggaaagaacttcattttcttccggcaattcaacatttgcacacct 8636366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 8640461 - 8640504
Alignment:
Q  198 cttcattttcttcccgcaatttaaactttgcacacctgtataaa 241  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||    
T  8640461 cttcattttcttcacgcaatttaaattttgcacacctatataaa 8640504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 9075200 - 9075170
Alignment:
Q  204 tttcttcccgcaatttaaactttgcacacct 234  Q
    |||||||||||||||||||||||||||||||    
T  9075200 tttcttcccgcaatttaaactttgcacacct 9075170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 8528038 - 8528094
Alignment:
Q  101 tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa 157  Q
    ||||| |||||||||  |||||||||||||||||| | ||||  |||||||||||||    
T  8528038 tcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaa 8528094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 48362609 - 48362540
Alignment:
Q  173 acaatctgttgggacaaggaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtataaat 242  Q
    ||||||||||| ||||  || | | |||| ||||||||| |||||||||||||||||||||| |||||||    
T  48362609 acaatctgttgagacagagatataccttccttttcttcctgcaatttaaactttgcacacctatataaat 48362540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 35777535 - 35777587
Alignment:
Q  187 caaggaaaaaacttcattttcttcccgcaatttaaactttgcacacctgtata 239  Q
    |||| ||| ||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  35777535 caagaaaagaacttcactttcttcccacaatttatactttgcacacctatata 35777587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 16715635 - 16715671
Alignment:
Q  203 ttttcttcccgcaatttaaactttgcacacctgtata 239  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  16715635 ttttcttcccgcaatttaaactttccacacctatata 16715671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 9442205 - 9442261
Alignment:
Q  101 tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa 157  Q
    ||||| |||||||||  |||||||||||||||||| | ||||  |||||||||||||    
T  9442205 tcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaa 9442261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University